<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14599

Description Uncharacterized protein (Fragment)
SequenceMCVIWFSDIMMPRMGPPTTARQENPMYLSFRNPQWPANQICKENVLEYFCNQANTFYEMNSCNQQIIMQSIKNRTVEECLRNMQGIQYVLWYSQPPLFIICKQRRNSPTNVSPISYYYIISGNVHQAPDMYSLIQSRLLGALEPLRNAFGEVTNYSRYNTAKGYYWEFKNKPNVKKRDEDKKDDEEEKLEERSTNFQKTRTMMLVNQLFSEMPPDEALEKEEVEEEDKKPEDVAQPPAEEPKFAEPAARSQNK
Length253
PositionHead
OrganismCaenorhabditis latens
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.11
Grand average of hydropathy-0.863
Instability index60.51
Isoelectric point5.26
Molecular weight29819.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14599
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.88|      27|      38|      92|     122|       1
---------------------------------------------------------------------------
   92-  118 (52.87/38.11)	YS..QPPLFIICKQRRNSPTNVSPIS.......YYY
  131-  166 (39.01/18.42)	YSliQSRLLGALEPLRNAFGEVTNYSryntakgYYW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.09|      24|      39|     168|     191|       2
---------------------------------------------------------------------------
  168-  191 (38.46/22.01)	FKNKPNVKKRDEDKKDDEEEKLEE
  209-  232 (39.62/22.86)	FSEMPPDEALEKEEVEEEDKKPED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14599 with Med6 domain of Kingdom Metazoa
Unable to open file!