<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14595

Description Uncharacterized protein (Fragment)
SequenceMAEKEKAAAVPAPEDVIEMDDSFSPQFVMEVNKIKSHIRKLVEDNPTRKFFAPLTSNLGDNTAILRIQFNNMMSKMEEKEKQSLVKELIKLVHHVAEKNSLDRVFVAASYERVVDTLLRFAHKKEVITTTLCVEGLIMTSDFRLCSRICQEKWKFIYECIPTIDYKGIRNILRYILESQLRRLPYTLSPEKVNELRIVENVILKIVDRDSNLMPPLITLSEIMRGMPKQAQIRSFIYPIPSHPAYYPPTSFWEDFGLNVNNTFVQSHHMLPYRPEHKASCLYTLYMILHPQNKSKTKQHWEMLVAVMMCEAMGEAEVLPENEPIPRYQWDNITNLVIYGMQHHLLSPQSFFKTVWRLLRQCKYTRARDEVMWIVFQVVSSLSTAIRLDDAIQEIVDLYNILFDGDVVWMGASDHPALFARFLAAAGTWMLLTKEFPDKMPPPNDTIKSHIRFIQDGAENFDSKNTAISSPKLADRGDTKVGKNLFPALNTIIDTPSDPAHPLFELSYQRKAANNFSAFSAEFLDALTLRSKKSLLNSVCHFLRQFSAEKLPSPSVFEIIARICLSEDCEAAIKDLESLAQRSLVVSSTSDRGSVENQNIQAKDQCHFLFDFLAYRIPYHYRYSKYLTTFHSLCHYFSLHIVNNPQNHQIYRLLEQFFLRRMCWKSFHENIQCYTSLFGASSKDNSLMRFFLHPRTFTVPVDQYQFPLNPEMFKMSIYAFLRAIKITGQEVVTEGTMHPYHVAGYGWPEKSTSYFPKWALEIIKNTDATKLLPNYEEILTKTRETARLHPSLTPNQFVMRYGDDQDPTTFYCMMAVMFKFAYAAVDSKWDITSEFYEVLEKKSPKDIVVMGNYLIDYIIADVKTQDCNEQTFKNIAKAAAVLVFTHHIQRADRFLLSLIMHPGNDEDALICIQIANEFILTTEFQDRIRWFYQNVPRKDQHPNEFIKAVVKYHDAFPEFEACELVSKYDSSTNPHMPTYYGCLIERLLPILDQYVYVALEQQGYKMNAQVLQTVAMFYKYHAMPIHFMYSVLFTSHGLMSGPDAKSFVTTFAAQIEECHLTEAFEKFNHQKTSCEQLMMELLDRLSASLDFILTPPPFVAKNWKVAELPPGAQTLYLACIEIMASPHSPETLVTAMINVMQMKPHLRPLNLLNLIGLLITALPSTYSDALHEEFINVFKNGETNDLKFEEIVFDNYEENLLLHLPNRARSINMITQIYWTHCNLNLLNPFAQEQVPKLLEHVKTEKDLWYTLRLVMPILRRFWDNWDTAKQMRSLRERFGPLFIVKLIIEKLGAMAEEGVAFEREQAFCDLFYNCKYVFAGDFLRDTAITEFAKLPESMRERLKFYQMAMGIGMGGGMTPQYPGAVFHHPQGLGSHPMQQYGMQHHLQHPHHPHHQQMQGQMHMNPMMHGMTPQQQYAYMQMQQQHYMQQQQQQHHHQQPPHIYIYVPMPSTSGKVISSDLYDCDWYWGDLDWKWAERLLLLCPVGYFLIRDSRSDTHLFTVSYHSQDKVYHSRLSLEDSRRNLGSRQPYVSRDYRNLVEIIERSLEQSLNGQQEMLHYRRGHEAEAARVNLTRPLTKQRRIIDEAMAVYFPGPKTFTGEDTAEFFLHGSQAVATKFATCLSEIENVREAKRGEFTRRAFHNGKMSISSVHGLDRLIRSRTEKERRAAFGQMRGGVRAVEIRKKLVQILSKLFVIIDFGEHVELQLEEAQRDVSEILQEINRMVAAWNGAERAQRGLNIVLYGRPNSGKSSILNQLAHDDVAIVSSIPGTTRDSLVTSLQINGVLCRLTDTAGIRHRTDDVIEAEGMRRAQQRLESADIIIVVVDPEYTSNDVAAILKDVEELKSGESKVFIVKNKTDLKLPYPEIDSVKKCHVVSTHATSSNGCEELRKELGRLVEELCPEANFLLDAELLR
Length1912
PositionTail
OrganismCaenorhabditis latens
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.292
Instability index48.48
Isoelectric point6.51
Molecular weight221082.68
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GTP binding	GO:0005525	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14595
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.81|      13|      14|     688|     700|       1
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  688-  700 (24.84/13.76)	RFFLHPRTFTVPV
  704-  716 (24.97/13.87)	QFPLNPEMFKMSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.73|      56|      64|    1242|    1305|       2
---------------------------------------------------------------------------
 1246- 1305 (90.54/82.40)	DLWYTLRLVMP..ILRrfwDNWDT..AKQMRSLRERFgPLFIVKLIIEKLGAMAEE..GVAFEREQ
 1309- 1370 (91.19/58.12)	DLFYNCKYVFAgdFLR...DTAITefAKLPESMRERL.KFYQMAMGIGMGGGMTPQypGAVFHHPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.12|      13|      65|     539|     551|       3
---------------------------------------------------------------------------
 1047- 1059 (20.04/ 9.86)	VTTFAAQIEECHL
 1063- 1075 (21.08/10.80)	FEKFNHQKTSCEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.29|      13|      65|     539|     551|       4
---------------------------------------------------------------------------
  539-  551 (26.56/15.84)	CHFLRQFSAEKLP
  605-  617 (27.73/16.88)	CHFLFDFLAYRIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     118.11|      15|      15|    1375|    1389|       5
---------------------------------------------------------------------------
 1375- 1389 (36.90/18.03)	HP.MQQYG.MQHHLQHP
 1391- 1405 (26.48/11.09)	HPhHQQMQ.GQMHM.NP
 1411- 1424 (21.47/ 7.76)	TP.QQQYAyMQ..MQQQ
 1425- 1439 (33.25/15.60)	HY.MQQQQ.QQHHHQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.91|      10|      15|     763|     772|       7
---------------------------------------------------------------------------
  763-  772 (16.49/10.24)	KNTDATKLLP
  780-  789 (17.42/11.28)	KTRETARLHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.18|      15|     202|     899|     913|       8
---------------------------------------------------------------------------
  899-  913 (29.20/18.08)	MHPGNDEDALICIQI
 1107- 1121 (27.98/17.00)	LPPGAQTLYLACIEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.64|      61|      70|      54|     117|      13
---------------------------------------------------------------------------
   54-  117 (84.16/87.04)	LTSNLGDNTAILRIQFnNMMSKMeEKEKQSLVKELIKLVHHVAEKNSLdRVFVAASYERVVDTL
  127-  187 (107.48/91.32)	ITTTLCVEGLIMTSDF.RLCSRI.CQEKWKFIYECIPTIDYKGIRNIL.RYILESQLRRLPYTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.00|      32|     523|     217|     252|      15
---------------------------------------------------------------------------
  217-  252 (52.31/46.96)	ITLSEIM.RGMPKQAQIRSFIYPIPShPAYYPPtsfW
  725-  757 (58.69/37.95)	ITGQEVVtEGTMHPYHVAGYGWPEKS.TSYFPK...W
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14595 with Med23 domain of Kingdom Metazoa
Unable to open file!