<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14591

Description Uncharacterized protein (Fragment)
SequenceMLPGFGTQTVSPFPNPPEYATAYTSDRINNGSAPPPPHALTEFKVFGEEYRLGDDVIAPLKDANVEELYKNKNNWKEEMKKLNRSAICAFFDLVEILIRAPDHPLREEKMIDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELGEICDNFRSYLSDGKEVIEDQFKLVTGKLPPPPQPSELSKWKIGVVGAEGTLYAGEVFTLQFTFGPQYPFNSPEVMFVGDTIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSSSKEKKHPIDDAIYVRTCNKNPSKTRWWFHVNSLRVAIVGEGVIGLSTATAILDLAAKENVTAPDIQIFHHKPFEKILSRHIAGLFRIDSGSEINKKYGYDTFEKLATLWREYGGLSGVQLVSGHILSDSKPRLDSQRVAYGNLVYNYRDLTEPELFGPTSLFDLPRNTTTHGIHYTAYTSEGLRFCPFLKKELMAKGVRFIQRKIENLEDLGAEFDVVVNAAGLYGGVLAGDDAGNMTPIRGVLIRVDAPWQKHFLYRDFSTITIPVIDSVYMGTVKQEGAYGPPNVTFNDIQDITSRYVKLQPSFKRVHMLSSFVGYRPGRKQVRVEKQVREAHGMKRFTVVHNYGHGGNGFTLGYGSSVHAACLVLDLPLDDYKGIIPDPLPVNSTIGEWVHVLDD
Length667
PositionMiddle
OrganismCaenorhabditis latens
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.254
Instability index43.03
Isoelectric point6.23
Molecular weight74881.51
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
D-amino-acid oxidase activity	GO:0003884	IEA:InterPro
FAD binding	GO:0071949	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
D-amino acid metabolic process	GO:0046416	IEA:InterPro
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14591
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.81|      11|      15|     237|     247|       1
---------------------------------------------------------------------------
  237-  247 (21.70/15.09)	SNGHICLSILS
  255-  265 (20.12/13.50)	SVQSVCLSILS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.77|      22|     141|      31|      52|       2
---------------------------------------------------------------------------
   31-   52 (42.53/22.89)	GSAPPPPHA..LTEFK..VFGEEYRL
  174-  199 (33.25/16.41)	GKLPPPPQPseLSKWKigVVGAEGTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.47|      14|      15|     566|     579|       3
---------------------------------------------------------------------------
  566-  579 (24.90/15.93)	SRYVKLQPSFKRVH
  582-  595 (24.57/15.63)	SSFVGYRPGRKQVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.10|      13|      15|     203|     216|       5
---------------------------------------------------------------------------
  203-  216 (21.07/15.83)	EVFTLQFTFgPQYP
  221-  233 (25.02/13.66)	EVMFVGDTI.PAHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14591 with Med7 domain of Kingdom Metazoa
Unable to open file!