<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14574

Description "Putative coactivator CBP, KIX domain-containing protein"
SequenceMESGDWRAEVSADSRERIRYKISETLNRHIPFSTYEGLQELKKVAVRFEEKIYAASISTSDYLRKISSKMLTMETRSEDPMSESDPMQSNSAANSVNPPIIFHNTPSFNSQGVSGAVDDWRAPLERERVVNKIMDSLKENLPFTRYDRLHELKKIAQRVEAEIFTAATSQSEYSRKICLHMLTMETRLQNYVSDSMYSNSAAISVNSSVPFNTTANGGDWQEEVYQKIKTMKDLYLLDLRPTQGASGAFGEPTLEHGDWRATVQADSRQRIVNKIMETLKRHVPFDGPEGLQELMKMAMKFEQRMYTLCTSQSDYLRKISLKMLTMETRYPAANNRTLQTIGVMLPDGGEKFKANLRRHEYELERRKKLQLEKSDYFRDYFWKISLKMRTMESRSEDPMSDPMQSNSAANSVSGAVGDWRAPLERERVVNKIMDSLKENLPFTRYDRLHELKKIAQRVEAEIFTAATSQSEYSRKICLNMLTMETRLQNYLSDSMYSNSAAISVNSSVPFNTTANGGDWQEEVYQKIKTMKDLYLLDLRPTQGASGAFGEPTLEPGDWRATVQADSRQRIVNKIMETLKRHVPFDGPEGLQELMKMAMKFEQRMYTLCTSQSDYLRKISLKMLTMETRYPAANNV
Length635
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.08
Grand average of hydropathy-0.662
Instability index50.25
Isoelectric point8.51
Molecular weight73112.31
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14574
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     531.53|      67|     108|      39|     105|       1
---------------------------------------------------------------------------
   39-   89 (86.97/57.74)	............................................................QELKKVAVRFEEKIYAASISTSDYLR....KISSKMLTMETRSEDPMSESDPMQS
   90-  198 (105.89/72.03)	NSAANSVNPPIIFHNTpsfnsqgvsgavddwraplerervvnkimdslkenlpftrydrlHELKKIAQRVEAEIFTAATSQSEYSR....KICLHMLTMETRLQNYV..SDSMYS
  292-  340 (87.17/57.90)	............................................................QELMKMAMKFEQRMYTLCTSQSDYLR....KISLKMLTMETRY..PAANNRTLQT
  346-  405 (80.15/52.59)	PDGGEKFKANLRRHEY..........................................elERRKK..LQLEK.........SDYFRdyfwKISLKMRTMESRSEDPM..SDPMQS
  406-  497 (108.17/73.75)	NSAANSVSGAVGDWRA.................plerervvnkimdslkenlpftrydrlHELKKIAQRVEAEIFTAATSQSEYSR....KICLNMLTMETRLQNYL..SDSMYS
  591-  628 (63.18/39.78)	............................................................QELMKMAMKFEQRMYTLCTSQSDYLR....KISLKMLTMETR.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     188.76|      18|     140|     126|     143|       2
---------------------------------------------------------------------------
   15-   32 (34.84/23.76)	RERIRYKISETLNRHIPF
  126-  143 (37.18/25.84)	RERVVNKIMDSLKENLPF
  268-  285 (39.78/28.16)	RQRIVNKIMETLKRHVPF
  425-  442 (37.18/25.84)	RERVVNKIMDSLKENLPF
  567-  584 (39.78/28.16)	RQRIVNKIMETLKRHVPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.47|      17|      37|     208|     224|       3
---------------------------------------------------------------------------
  208-  224 (36.83/25.80)	SVPF.NTTANGGDWQEEV
  246-  263 (32.40/21.81)	SGAFgEPTLEHGDWRATV
  507-  523 (36.83/25.80)	SVPF.NTTANGGDWQEEV
  545-  562 (32.41/21.81)	SGAFgEPTLEPGDWRATV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.89|      30|     297|     199|     245|       4
---------------------------------------------------------------------------
  199-  245 (51.95/29.40)	NSAAISVNSsvpfnttanggdwqeevYQKIKTMKDLYLLDLRPTQGA
  498-  544 (51.95/29.40)	NSAAISVNSsvpfnttanggdwqeevYQKIKTMKDLYLLDLRPTQGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14574 with Med15 domain of Kingdom Viridiplantae
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