<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14564

Description Uncharacterized protein
SequenceMDGFDLIDSDFDADLDMWIKFYFENVLEEPMTDFGTSVDDMTINPNYPSQSLMEILDTDAYFGEGSSNASQFGMAREMMQSSSITFNNSNAGTLHGSGQILSSAVKTLSNHAAQSSQNQPNITFDDQMRQFHYQTPSVQQQQNLNQNQFQLQQVTGTSGDLISLVRQQQVRKMRAILSAPVGFKTLDEFPSRDTYREYLFRQATTADDKYMLGKNASYLEKMLRFLNITSVDMVPEDDKRVYEYMNIIVNYMAFTTKAKPGGFFQHHVPVHQSPNGPSVQPPNPSQRATNQETNMVNFNQGFTSRRLPTEQSGMTSSSNITCFPIGLGSPISVFSNATATNLPFHQVNHQLPQMFNPEKMKQPMRKTNAFPKPKIRSGRSPLISSFDINGVVSSSSSRRGRSPLTTVETQKHTEPTGTRFRGPQTSEDAVHHLTQVVKSVSSKELSSSLTDIGLMEKAADIIPDFMPTNLVGNVNNKPHSKTRRELSVGPPEWDIYPTETSFNKKPKIENKWTLLEEIKEVNSILLETTIHAVLDPSEDNITILGDYEGIKLKCLFRNICFPDLLSPYGSISSEKMPEFGVLFIVPFDYPASTTRIFRSGQNALKNEPWGTLYEDMLTRFDVSIREVRGILCVGELAKMWDASAHAVMTEFIRKLGGENYGLTYGTWESCISSSSGSN
Length678
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.09
Grand average of hydropathy-0.487
Instability index53.11
Isoelectric point5.70
Molecular weight76037.67
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14564
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.57|      15|      20|     398|     412|       1
---------------------------------------------------------------------------
  376-  391 (21.87/10.84)	R.SGRSPLiSSFDINGV
  398-  412 (27.35/15.35)	R.RGRSPL.TTVETQKH
  419-  432 (20.36/ 9.61)	RfRG..PQ.TSEDAVHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.77|      20|      20|     111|     130|       2
---------------------------------------------------------------------------
  111-  130 (35.81/21.10)	HAAQSSQNQPNITFDD.QMRQ
  133-  153 (30.96/17.31)	YQTPSVQQQQNLNQNQfQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.20|      32|     132|     330|     375|       3
---------------------------------------------------------------------------
  288-  325 (48.40/37.18)	ATNQETNMVN..FNQGFTSRRLpteQSGMtssSNITCFP...I
  339-  375 (50.80/40.21)	ATNLPFHQVNhqLPQMFNPEKM...KQPM...RKTNAFPkpkI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.83|      20|      25|      11|      35|       4
---------------------------------------------------------------------------
   16-   35 (40.01/32.10)	DMWI..KFYFENVLEEPMTD..FG
   40-   63 (27.81/10.25)	DMTInpNYPSQSLMEILDTDayFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.91|      22|      25|      67|      88|       5
---------------------------------------------------------------------------
   67-   88 (38.38/23.63)	SNASQFGMAREMMQSSSITFNN
   89-  110 (35.53/21.37)	SNAGTLHGSGQILSSAVKTLSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.95|      12|      25|     475|     486|       6
---------------------------------------------------------------------------
  475-  486 (21.17/14.29)	NNKPHSKTRREL
  503-  514 (21.78/14.92)	NKKPKIENKWTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.98|      13|      24|     195|     207|       7
---------------------------------------------------------------------------
  195-  207 (23.36/19.57)	YREYLFR..QATTAD
  218-  232 (17.62/12.76)	YLEKMLRflNITSVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.09|      11|      32|     577|     588|       9
---------------------------------------------------------------------------
  577-  588 (17.80/15.33)	PeFGVLF...IVPFD
  608-  621 (18.29/10.12)	P.WGTLYedmLTRFD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14564 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FDINGVVSSSSSRRGRSPLTTVETQKHTEPTGTRFRGPQTSEDAVHHLTQVV
2) FQHHVPVHQSPNGPSVQPPNPSQRATNQETNMVNFNQGFTSRRLPTEQSGMT
3) LPFHQVNHQLPQMFNPEKMKQPMRKTNAFPKPKIRSGR
4) SNHAAQSSQNQPNITFDDQMRQFHYQTPSVQ
386
264
342
109
437
315
379
139










Molecular Recognition Features






MoRF SequenceStartStop




1) AFPKPK
369
374