<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14538

Description Putative transcription factor IIS
SequenceMDLDEFKAILSNSTADVWGIIDAAITVASTEYSGELKRRRDGIVQRLYSERCSNCDVDLSEQIPNGVGRKVNDDVRGGDDDVRGGDDDVRGGDDSPLTPQEDEDDEPDPYGGLFDDEQSKVLRIKEQLEDSNQTDDAIADLLQTLADMDLTFTVLKETDIGRNVNRLRKHPSNEVRGLVKQLVRKWKDLVDEWVGSNNSTLARSTLTDGDSPLVQNVPRGSQNGYQQGPDFGYSPNPHNGSSGSERNNSEPEQNRPKPVATKKATPSRPPPQSRPVMAASASAPPPNRTQREEGIDMDRLASARKRLQENYQEAQNAKKERKIQMMDIHEIPKPRNGFIARNKGNFHGRQNR
Length352
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.04
Grand average of hydropathy-1.071
Instability index43.60
Isoelectric point5.09
Molecular weight39243.62
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14538
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.09|      29|      92|      56|      84|       1
---------------------------------------------------------------------------
   56-   84 (51.27/29.93)	DVDLSEQI..PNGVGRKVNDDVRGGDDDVRG
  147-  177 (46.82/26.72)	DMDLTFTVlkETDIGRNVNRLRKHPSNEVRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.46|      29|      94|     227|     255|       3
---------------------------------------------------------------------------
  227-  255 (55.86/28.58)	QGPDFGYSPNPHNGSSGSERNNSEPEQNR
  324-  352 (55.61/28.42)	QMMDIHEIPKPRNGFIARNKGNFHGRQNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14538 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QIPNGVGRKVNDDVRGGDDDVRGGDDDVRGGDDSPLTPQEDEDDEPDPYGGLFDDE
2) SNNSTLARSTLTDGDSPLVQNVPRGSQNGYQQGPDFGYSPNPHNGSSGSERNNSEPEQNRPKPVATKKATPSRPPPQSRPVMAASASAPPPNRTQREEGIDMDRLASARKRLQENYQEAQNAKKERKIQMMDIHEIPKPRNGFIARNKGNFHGRQNR
62
196
117
352










Molecular Recognition Features






MoRF SequenceStartStop




1) FIARNKGNFHGR
2) QMMDIHEI
3) SKVLRIKEQL
338
324
119
349
331
128