<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14537

Description "Putative zinc finger, RING/FYVE/PHD-type"
SequenceMGSEAELIDEEIEEFNHTIFIAVGMNVKDGKSLILWTLKNFSGMKKISLLYVHQPADLDDKLSVHKILNEYSLTLSQAGVQAGKVWTEANDVETGIVEAIELHRVKWLVMGAASEKLYSKDMLEIKSNKAIHVCQQAPILCQIWFVCKGHLIYTRRSGLTLPLPHESQDKLVRSISAMFLEGPQGLSSSDLQDRLENATKDAEKSKQKAFEESIKRWRAEEDANEALRKAEESEKSLMEESERIKEIVVTLTTKAQEIETMKNQRDQFIKELQTVKDQQPGLVDQISRARESEKELEERIIQAVNLLITFKENRDNLQDTRDNARREINRLEKYVRVESTDLSHAEFYKPSFMEIMEATKDFDQSLKIGEGKRGSVYKGILRHLRVAIKMLPSLGSQSDAEFENEAEILSRVRHPNLVTLIGVCPESRSLIYEYLENGNLEDQIASLEWYDRIRICSEICSALIFLHGSRPQIIHGNLKLTNVLLDSNHVSKLSDLEINRLIPNVLHNDEPEVSVYMDPEMLEFGKLAVSSDVYSFGVVLLRMLTGRPALSVVKDTKCALENGSFGTILDLTGGDWPIERAKELAYLGLRCCEKNSMNRPDLVDDILPKLETMRDLVTVSPVESENHHKIPSYFVCPIYQEVMKDPYIAADGFTYEADAIKGWLNSGHKTSPMTNLKLDHCDLLPNHALSYAIQEWLQHS
Length700
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.06
Grand average of hydropathy-0.368
Instability index43.29
Isoelectric point5.31
Molecular weight79599.96
Publications
PubMed=28538728

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14537
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.96|      18|      26|     196|     221|       1
---------------------------------------------------------------------------
  196-  213 (29.23/32.50)	ENATKDAEKSKQKAFEES
  224-  241 (28.74/11.70)	NEALRKAEESEKSLMEES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.27|      10|      26|     535|     546|       2
---------------------------------------------------------------------------
  535-  546 (14.73/15.67)	SFGVVLlrMLTG
  564-  573 (19.54/12.37)	SFGTIL..DLTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.57|      20|      30|     421|     448|       3
---------------------------------------------------------------------------
  421-  444 (23.64/31.01)	IGVCPE.SRSLIYeyLEnGNlEDQI
  453-  473 (33.93/14.23)	IRICSEiCSALIF..LH.GS.RPQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.06|      28|      53|     242|     273|       4
---------------------------------------------------------------------------
  242-  273 (40.25/40.30)	ERIKEIVVTLTTKAQEIETMKNQRDqfikELQ
  277-  297 (31.72/20.98)	DQQPGLVDQI.SRARESEK..........ELE
  298-  318 (34.09/23.11)	ERIIQAVNLLI.......TFKENRD....NLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.27|      15|      36|     511|     525|       6
---------------------------------------------------------------------------
  511-  525 (29.14/19.65)	PEVSVYMDPE.MLEFG
  548-  563 (21.13/12.39)	PALSVVKDTKcALENG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14537 with Med32 domain of Kingdom Viridiplantae
Unable to open file!