<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14536

Description "Putative fibrillarin, S-adenosyl-L-methionine-dependent methyltransferase"
SequenceMRAPMRGGGRGGGGFSGGRGDGSGRGGRGRGGFGGRGRGGADMTRGGGRSGGRGGGRGRGGGRGGRGGGMKGGSKVVVEPHRHEGVFIAKGKEDALCTKNMVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWMKPGSKVLYLGAASGTTVSHVSDLVGPGGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGYFVISIKANCIDSTVPAEAVFASEVKKLQAEQFKPMEQVTLEPFERDHACVVGAYRVPKKQKPAS
Length314
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.07
Grand average of hydropathy-0.381
Instability index31.58
Isoelectric point10.14
Molecular weight33032.34
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
box C/D RNP complex	GO:0031428	IBA:GO_Central
Cajal body	GO:0015030	IBA:GO_Central
small-subunit processome	GO:0032040	IBA:GO_Central

GO - Biological Function
histone-glutamine methyltransferase activity	GO:1990259	IBA:GO_Central
RNA binding	GO:0003723	IBA:GO_Central
rRNA methyltransferase activity	GO:0008649	IBA:GO_Central

GO - Biological Process
box C/D RNA 3'-end processing	GO:0000494	IBA:GO_Central
histone glutamine methylation	GO:1990258	IBA:GO_Central
rRNA methylation	GO:0031167	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14536
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.26|      15|      16|       7|      22|       1
---------------------------------------------------------------------------
    7-   22 (33.58/ 9.56)	G.GGRGGGGFsGGRGDG
   24-   39 (32.68/ 6.90)	GrGGRGRGGF.GGRGRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.07|      13|      18|      40|      52|       2
---------------------------------------------------------------------------
   40-   52 (26.52/ 9.20)	GADMTRGGGRSGG
   61-   73 (27.54/ 9.84)	GGRGGRGGGMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.69|      15|      17|     195|     211|       3
---------------------------------------------------------------------------
  195-  211 (21.96/20.75)	AKKR.....TNVipIIEDARHP
  212-  231 (20.73/12.01)	AKYRmlvgmVDV..IFSDVAQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.72|      64|     159|      85|     152|       4
---------------------------------------------------------------------------
   85-  152 (104.07/62.95)	GVFIAKGKedALCTKNMVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVlgGVDNI..WMKPGS
  249-  314 (104.65/54.01)	GYFVISIK..ANCIDSTVPAEAVFASEVKKLQAEQFKPMEQVTLEPFERDHACVV..GAYRVpkKQKPAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14536 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRAPMRGGGRGGGGFSGGRGDGSGRGGRGRGGFGGRGRGGADMTRGGGRSGGRGGGRGRGGGRGGRGGGMKGGSKVVVEPHRHE
1
84










Molecular Recognition Features






MoRF SequenceStartStop




1) MRAPMRGGGRGGGGFSGGRGDGSGRGGRGRGGFGGRGRGGADMTRGGGRSGGRGGGRGRGGGRGGR
1
66