<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14532

Description Putative REF4-related 1
SequenceMAVSLGTLRLWDSILELTKKSQDKGSDPMIWAIHLSSQLNSAGVSLPSPELANLLVSHICWDNNNPISWKFLEKALIFNIVPPLLVLALLSTRVIPMRHTQPAAFRLYMELLKRHAFKLKPHVEFKNYEVIMNSIDIVLNLSQIFGTKVNDPGSVLLEFIVAVVWQLVEAALGDEGLLELTKERTHKWNVPQDMEIEDSGSYGGKRIEILQSRNTVMAVELIGLFLQSKITSRILLLARRNMPTHWRSLVQDIEVLAVNSSALRSSKVMTPETLLQLISDDHKVVSEGKKANYLQEIHTIMSSSAGISHKVSGSSLWIPIDLALEDAMDGSQVDTTSAIEIITRHVKALQALHGTSWHECFLGLWMAALRLVQRERDPIEGPMPRLDTRLCMLLSITTLVVSDLIEDEESLSQNNINCQTTQTCKENRRMELVSSLQSLGDYQSLLTPPQAVIAAANQAAARAVMIISGNNVGSSAYFDLVNTKDIAAGNLHHLIVEACIARNLLDTSAYYWPGYVTGRINQIPHGVPAQVPGWSTFMKGAPLTPVMTNALVSEPASSLAELEKVFEIAVNGSDDDKIAAATILCGASLIRGWNVQEHSVYFITRLLSPPLPANYSGNDSHLIAYAPMLNVLLVGIAPIDCVQIFSLHGLVPHLAGSLMPICEVFGSCVPNISWTLTTGEEISAYAVFSNAFALLLKLWRFNHPPLEYGVGDVPPVGSQLTPEYLLLMRNSQLVSSGSLYEDRNRRRLSAVAKASCPNPMFVDSFPKLKAWYRQHQACLASTLSGLVHSPVHQIVDSLLNMMFRKINRNQPLNSVSGSSCSSGPGSDDTSLWPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLAIIVSYFSAEVSRGVWKPVFMNGSDWPSPAANLSNVEEHIKNILAATNVNVPRLFAGISSPFTLPLPLAAFVSVTITYKLDKASQRFLDLAGPALESLAAGCPWPCMPIVASLWTQKAKKWSDFLVFSASRTVFLHDNDAVYQLLKSCFTATLGLNNSLVSTHGGVGALLGHGFGSNLYGEISPVAPGFLYLRVYRSIRDIMFLREDIISLLIQCVKDIASSGATTPKGKQETKYGQLSLATSLTKVKLAAQLAASILWISGGQGLVQSLINETLPSWFISAHREETGGPVSMLSGYALGYFTVLCGAFAWGVDSSTSASKWRPRFLGSHMDFLASALNGKITLGCDPITWHSYVTGFLNLMLGCMADWVVEVDVEVLKRLSKGLRQWNEDELALKLLESGGVGTMGAAAELIAQTDS
Length1298
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.08
Grand average of hydropathy0.166
Instability index43.07
Isoelectric point6.21
Molecular weight141709.06
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14532
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.38|      20|      24|     627|     646|       1
---------------------------------------------------------------------------
  627-  646 (35.88/19.92)	PMLNVLLVGIAPI..DCVQIFS
  652-  673 (33.50/18.15)	PHLAGSLMPICEVfgSCVPNIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.56|      25|     319|     506|     598|       2
---------------------------------------------------------------------------
  506-  551 (27.01/85.68)	DTSayYWPgyvtgrinqiphgvpaQVPGWsTFMKGAPLtpVMTNAL
  828-  852 (47.55/ 6.60)	DTS..LWP................KLPAW.DILEAVPF..VVDAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.86|      16|      30|     757|     774|       3
---------------------------------------------------------------------------
  757-  774 (27.39/24.44)	PNPMFVDSFpkLKAWYRQ
  790-  805 (29.47/18.34)	PVHQIVDSL..LNMMFRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.90|      22|     318|     356|     390|       4
---------------------------------------------------------------------------
    8-   29 (39.31/18.10)	LRLWDSILELTKKSQDKGSDPM
  362-  383 (40.59/33.37)	LGLWMAALRLVQRERDPIEGPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.37|      27|      32|     429|     457|       6
---------------------------------------------------------------------------
  429-  457 (41.01/31.70)	RMELVSSLQSLGD..YQSLLTPPQavIAAAN
  462-  490 (41.36/25.70)	RAVMIISGNNVGSsaYFDLVNTKD..IAAGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.12|      21|      67|     862|     885|      10
---------------------------------------------------------------------------
  862-  885 (29.63/24.89)	PReLCTGLKdlADF.LPASLAIIVS
  932-  953 (35.49/18.69)	PR.LFAGIS..SPFtLPLPLAAFVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14532 with Med33 domain of Kingdom Viridiplantae
Unable to open file!