<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14530

Description Putative transcription factor IIS
SequenceMGSKSAARMGYWREYFKTSNGDIFETIEKAIMIAACDYPKEFGVRRDGIAQTLFNCKLIKCYGCDKVELGVPDEEQDDRDDGDNRKEIRAVDRQVSSYSYGVAEALTDEIEEESQVFGEVMRIREIVDNHQDESESVLYNSLRKLQLMDLSVETLKATEIGKSVNVLRKHVSKDVSSIAKTLIEAWKILVDEWVMATEKTVVSEATPDSLNPSVLDEEEGLPSPPLDDLTFLYPHGSLELSEFFDGMDEYGNPGNSGGFNKNHNSPKPKQQKPSNVPNTVRKNEPGFDSMKRKQPTVVKPIKPAVPESEPRQRVKPNVERKLQNVLKRPPQQIKQRASGEATAQEKFEAAKRKLQERYQEAKDAKKQRTIQVMELHDLPKPKGVPVRNQQNVRPGSNHNRHR
Length402
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.06
Grand average of hydropathy-0.871
Instability index48.49
Isoelectric point6.45
Molecular weight45634.92
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14530
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.99|      27|      31|     255|     283|       1
---------------------------------------------------------------------------
  257-  283 (51.14/27.28)	GGFNK.NHNSP...KP.KQQKPSNVP.NTVRKN
  285-  317 (32.23/10.65)	PGFDSmKRKQPtvvKPiKPAVPESEPrQRVKPN
  376-  391 (24.62/ 8.45)	.......HDLP...KP.K.....GVP.VRNQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.22|      18|      33|     319|     336|       2
---------------------------------------------------------------------------
  319-  336 (31.27/22.23)	ERKLQNVLKRPPQQIKQR
  351-  368 (29.95/20.98)	KRKLQERYQEAKDAKKQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14530 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EYGNPGNSGGFNKNHNSPKPKQQKPSNVPNTVRKNEPGFDSMKRKQPTVVKPIKPAVPESEPRQRVKPNVERKLQNVLKRPPQQIKQRASGEATAQEKFEAAKRKLQERYQEAKDAKKQRTIQVMELHDLPKPKGVPVRNQQNVRPGSNHNRHR
249
402










Molecular Recognition Features






MoRF SequenceStartStop




1) KRKLQERY
2) LDDLTFLYPHGSLELSEFFD
351
226
358
245