<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14529

Description Putative pre-mRNA-processing protein 40A
SequenceMDNNPQNPASQSLRPPAIGSIGSQSFGTNYSMQFRGATVTPQQGQPFMQPGSAAPQYRPVGQTPLPQYSQLLQQRPGGHPSPSSQPMPMPYMQQPPQFQNQNPGVPLSSSYTMHAPVVSSGGQPWMSSANQGPPTVSSVPQTGQQPSTATPPNQASSAVDASQEASADWQEYTAADGRRYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFTTAEGKKYYYNKDTKQSKWTIPEELKLARELAEKEASRGTQSPASITPSALDQASALASANSVKEVSSSPVAVTPVIPAGNAPPNVASEPSSTVSASANMHSSPLGKTENSSSHGVPKSIDGVSVQDTEEAKKGMAAAGKVNTTPVDEKAADDEQFLYASKQEAKMAFKALLEESNVKADWNWEQAMRVIINDKRYGALKAHGERKQAFNEYLMQRKKVEAEERRLKQRKAKEEFTKMLEESEELTSSMRWSKAMALFEDDERYKAVDRPSDREDLFQNYLVDLQKKERAKAQEEQRQNRSEYRQFLETCGLIKVDTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEKEEDEQRKIKKEHIKRVERKNRDEFRKMLEEHVTSGTLTAKTQWRDYCQKVKESVAYQAVASNTSGSTPRDLFEDVVEELEKKYHEDKIRVKDSLKSKKVAVLPTWTLEDLKAAIEDDIISSLSDINLQLVFEDLVERAKEKEEKELKKRLSLVKDFTELLYEIKEITASSSWDDCLPLFEESSEFRAIGDESAAREAFEEYVARLVEKAKEKERKREEEKARKEEKERRKEKERKEKEKDREEREKEKSKDKDRSKKDDSDSENLDTVVEHKEDKKRDRKHRKRHQDDVASDKDERDDSKRSRRHGSDRKKSRKHAYSPESDTESKHKKHKRDSRSKNGGHEELEDGEVGEDGEIQ
Length922
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.06
Grand average of hydropathy-1.199
Instability index56.83
Isoelectric point6.15
Molecular weight105453.77
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central
signal transduction	GO:0007165	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14529
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     113.01|      17|      17|     777|     793|       1
---------------------------------------------------------------------------
  473-  487 (19.83/ 7.21)	DDERYKAVD..RPS.DRE
  563-  577 (20.13/ 7.46)	DLE..KEEDEQRKI.KKE
  777-  793 (28.97/14.57)	EKERKREEEKARKE.EKE
  797-  813 (22.37/ 9.26)	EKERK.EKEKDREErEKE
  864-  880 (21.71/ 8.73)	DSKRSRRHGSDRKK.SRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     375.14|      65|      65|     374|     438|       2
---------------------------------------------------------------------------
  374-  430 (79.43/44.70)	............KQ.EAKMAFKALLEE....SN.VKADWNWEQAMRVIINDKRYGALKAH..GERK...............QAFNEY...LMQRK
  431-  498 (53.92/27.97)	KVEAEERR...lKQrKAKEEFTKMLEE....SEeLTSSMRWSKAM..........AL.....FE..dderykavdrpsdreDLFQNY...LVDLQ
  499-  561 (67.65/36.98)	KKERAKAQ..eeQR.QNRSEYRQFLET....CGlIKVDTQWRKVQDRLEDDERCSRLE.K..IDRL...............EIFQEY...I....
  589-  641 (41.01/19.50)	...................EFRKMLEEhvtsGT.LTAKTQWRDYCQKVKESVAYQAVASNtsGSTP...............RDLFED...V....
  642-  704 (60.86/32.52)	.VEELEKKyhedKI.RVKDSLKS..KK....VA.VLPTWTLED.LKAAIEDDIISSL.SD..INLQ...............LVF.ED...LVERA
  705-  775 (72.26/40.00)	K.EKEEKE.lkkRL.SLVKDFTELLYE...iKE.ITASSSWDDCLPLFEESSEFRAIGDE..SAAR...............EAFEEYvarLVEKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.79|      34|      39|     164|     202|       3
---------------------------------------------------------------------------
  164-  197 (68.16/45.55)	EASADWQEYTAADGRRYYYNKRTKQSSWEKPLEL
  205-  238 (67.63/34.57)	DASTVWKEFTTAEGKKYYYNKDTKQSKWTIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     162.25|      25|      25|      35|      59|       4
---------------------------------------------------------------------------
   35-   59 (51.84/29.09)	R.GATVTPQQGQP....FMQPGSAAPQYRP
   61-   76 (25.74/10.87)	..GQTPLPQYSQ.....LLQQ.......RP
   77-  100 (29.17/13.26)	..GGHPSP.SSQPmpmpYMQ...QPPQFQN
  112-  134 (35.01/17.34)	TmHAPVVSSGGQP....WM...SSANQGPP
  140-  152 (20.50/ 7.21)	.......PQTGQ.......QPSTATP...P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.33|      21|      25|     241|     261|       5
---------------------------------------------------------------------------
  281-  305 (18.35/ 6.73)	..SSPVAVTPvipagnAPPNVASEPSS
  306-  325 (21.74/ 9.37)	TVSASANM.......hSSPLGKTENSS
  326-  346 (27.25/13.66)	SHGVPKSIDG......VSVQDTEEAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      49.16|      10|      45|     844|     853|       7
---------------------------------------------------------------------------
  844-  853 (18.30/10.10)	DRKHRKRHQD
  890-  899 (16.05/ 7.88)	ESKHKKHKRD
  900-  909 (14.82/ 6.68)	SRSKNGGHEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14529 with Med35 domain of Kingdom Viridiplantae
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