<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14519

Description Putative mediator subunit 8
SequenceMDGPMAVGQGQQPQQQQEQQQQPAKVVERLNTAVQQQLNLESVKTRAISLFKAISRILEDFDLLARTNSVPKWHDVSSQFSMVNLELYNIVEDIKKVSKAFVVHPKNVNAENAAILPVMISSKLLPEIEADDNAKREQLLYGMQNLSIPAQIEKLKARIDMIGAACESAEKVIADTRKTYFGTRQGPTNILTLDKAQAAKIQEQGNILRHAVNHGQGLRIPMDQRQITSALPAHLADVLPVGDNTQTVSESSGGMYMKNTPPVSSNNVNNQGALMQGSGSQLMGRAAASPGGTGTSSFDNTTASPLPYANSPRSAANMMNTPSPQQQTQQQHQQQQQQQRQKFMQQLPQHQQQMLAQQLRQSPMTGLGQNQLSQLHDLQGQAQNKYQLHSQSQMQYSQSLGGQQFQGRQLPSGGIQHGISQSQLNQGNQLNRHLNQMSGTANSALFNAAQATPNNQMMSNMSAMMTSQPHVARMQQYGLSGANHNLGSQSLNDQVFNMGAANPNTMMPMQQQQQQHGSQGAFGNMQQNTQNLQPGMVPMQNQQQNHTNFQQHRQNQ
Length556
PositionHead
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.04
Grand average of hydropathy-0.758
Instability index55.45
Isoelectric point9.38
Molecular weight61246.90
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14519
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     110.08|      18|      18|     509|     526|       2
---------------------------------------------------------------------------
   10-   23 (26.31/ 8.02)	GQQ....PQQQQEQQQQP
  481-  498 (25.47/ 7.45)	GANHNLGSQSLNDQVFNM
  499-  516 (30.59/10.90)	GAANPNTMMPMQQQQQQH
  517-  534 (27.71/ 8.96)	GSQGAFGNMQQNTQNLQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.67|      13|      18|     290|     307|       5
---------------------------------------------------------------------------
  290-  305 (15.15/18.93)	PggTGTSSFDNTtASP
  312-  324 (25.52/ 8.68)	P..RSAANMMNT.PSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.28|      13|      18|      68|      80|       7
---------------------------------------------------------------------------
   68-   80 (25.19/23.51)	NSVPKWHDVSSQF
   89-  101 (21.09/18.43)	NIVEDIKKVSKAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.23|      16|      18|     421|     437|       8
---------------------------------------------------------------------------
  421-  437 (25.14/15.22)	QSQLNQGNQLNRHlNQM
  442-  457 (28.10/13.09)	NSALFNAAQATPN.NQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.26|      11|      19|     369|     381|       9
---------------------------------------------------------------------------
  369-  381 (16.23/12.93)	QNQLSQlhDLQGQ
  393-  403 (22.02/10.50)	QMQYSQ..SLGGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.00|      18|      19|     240|     258|      10
---------------------------------------------------------------------------
  240-  257 (33.15/18.62)	PVG....DNTQTVSESSGGMYM
  262-  283 (26.85/ 9.46)	PVSsnnvNNQGALMQGSGSQLM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14519 with Med8 domain of Kingdom Viridiplantae
Unable to open file!