<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14514

Description Uncharacterized protein
SequenceMFLEDFINGTEVSSLLDCIRLTAGPLHALDAATRPAWAAPVSAVSGAASSIPTLSRANVNGQMPNGTNPNVGHVYGPGTGPGGNPGASAMLTASTVASGGGMGIVPSTLLPIDVSFVLRGPYWIRIIYRKYFAVNMRCFAGDQVWLQPATPPKGGPTVGGSLPCPQFRPFIMEHVAQELNGLDPNFDGGQPSAGPTNSNNSAASPGPQLSAPNVTRADPTVMSLPGNQPVGFNRSTNAMSASPNSLLVRRATVTVPAHVRGELNTAIIGLGDNGGYGGGWSIC
Length283
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.06
Grand average of hydropathy-0.022
Instability index32.61
Isoelectric point7.72
Molecular weight29000.47
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14514
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.77|      36|     141|      46|      81|       1
---------------------------------------------------------------------------
   46-   81 (68.70/24.19)	GAASSIPTLSRANVNGQMPNGTNPNVGHVYG.....PGTGP
  189-  229 (60.06/20.43)	GQPSAGPTNSNNSAASPGPQLSAPNVTRADPtvmslPGNQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.29|      15|      87|     174|     188|       4
---------------------------------------------------------------------------
  174-  188 (30.19/17.59)	HVAQELN....GLDPN..FDG
  258-  278 (20.10/ 9.55)	HVRGELNtaiiGLGDNggYGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14514 with Med14 domain of Kingdom Viridiplantae
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