<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14511

Description Uncharacterized protein
SequenceMDSNNWRPTQGASSGVVDPSMESGDWRAQLQADSRQRIVNKIMDTLKRHLPFSGNEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMENRSQNSMPDAMQSSSAANSVNPSDLGSQVMQQGQQLPISAPSNNIQSGQQMMSQSMHSNIVSAGMQSALPPGSGLQQSTMGNVAGQNSNLQNIQNMSGVQQNAVGNTMGPGNFANQRQQIQGRQQLAPQQQQQQQQQQQQQTQNYLYQQKLHQMAKQTLQQPLQSQMQSHIPQQNLLQPGHQQSVMQPAMVPTSSLSSVVQNQQPGVPQSSQPLMNHQQSVLRQRQQQVQPTQQNPMGQQANATNLQQNQLIGQQNNYSDMQQQQRLMGQQNKLSSVQQPQQLIGQHNNLSSMQQQQSGNSNMQTNQHSVQQMLQSSMPMQQQNHQNSATLLPTQVQQPLTQLQQPVMPHMQSQQQQVGMQQQPNLLQRDMQQRLPTSGVFQQQNVIDQQKQLFQQQRAMPEASSTSLDSTAQTGNSNGGDWQEEVYQKIKAMKDLYLLDLNDMHQKIIGKLQQYDSLPQQPKNEQLEKLKVFKNMLERYMQFLQIPKNSILPNYKDKLGTYEKQIIQVINSNRRKPVGPQQQAQALPPAHMQSMQQSQQTHSQLTQVQSQETQMNLQGGSMAAMQPNNMGNLQQSNVPSLSGGSNVQQNMMNPIQPGSNLDPGQNSSMNSLQPISSGPQQVNINPMSLQANTNMLQHQHIKQEQLLQSQQLKQFQQRQMQQQFLQKQQFMQQQQQQQFHQQAKQQQPNGQMQGNQLSQLHQMNDGSDVKLRQQINVKAGAFQQHHAQRSAYHQQLKPGAPFSPQLLSSASPQMSQHASPQIDQSNMLKSASSPFTVPSPSTSSASPIPGELINGVPSLSNVGNIGHQQPSSAVLPTQSLAIGTPGISASPLLAEFTSPDGNHGAVASIGSGKPVAEQPLERLLKVVKSMSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVTQDGANGTRKMKRFTSAMPLNVASSAGSVNDSFKHSETSELDSTASSSNKRPRIESNHALLEEIKEINRGLIDTVVSISEEDVDPAAASSVSDGGDGTVITCSFSAVALGPNLKSQYASAQMSPIQPLRLLVPANYPSCSPILLDKFPAEVSKEFEDISTKTKSRFSISLRSLSQPMSLKDIARTWDACAAAVMSDYAQQRGGGTFSSKYGTWENCLSAA
Length1237
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.04
Grand average of hydropathy-0.756
Instability index69.45
Isoelectric point9.33
Molecular weight136033.80
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14511
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.77|      29|      29|     660|     688|       5
---------------------------------------------------------------------------
  447-  473 (36.07/ 6.93)	SQQQQV.GMQQQPNLLQRDMQQRLP..TSG
  613-  640 (34.63/ 6.33)	GPQQQA.QALP.PAHMQSMQQSQQTHSQLT
  641-  678 (40.07/ 8.57)	QVQSQEtQMNLQPNNMGNLQQSNVPSLSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     561.32|     100|     131|     119|     218|       6
---------------------------------------------------------------------------
   11-  126 (97.59/22.47)	GASSGVVDPS..MES..G.............................DwraQLQADS...RQRIVNKIMDTlkrH..LP....fSGN..........eGLQE..LKKIA..................vrfeekiytaatSQSDYL.RKISlkmlTMENRSQ....NSMPDAMQS............................S..SAA...NS...........................VNP....S............................dLGSQV....MQQ
  127-  255 (159.44/41.58)	GQQLPISAPSNNIQS..G.............................Q...QMMSQSM..HSNIVSAGMQS...A..LP.....PGS...........GLQQSTMGNVA..............................GQNSNL.QNIQ....NMSGVQQ....NAVGNTMGP............................G..NFA...NQ...........................RQQIQGRQqlapqqqqqqqqqqqqqtqnylyqqklhqMAKQT....LQQ
  256-  357 (113.38/27.34)	....PLQS...QMQShiP.............................Q...QNLLQPG..HQQSV...MQP...A..MV.....PTSslssvvqnqqpGVPQSSQPLMN..............................HQQSVLrQRQQ....QVQPTQQ....NPMGQQANA............................T..N.....................................LQQNQ............................lIGQQNnysdMQQ
  374-  548 (63.66/11.98)	PQQL.IG.QHNNLSS...mqqqqsgnsnmqtnqhsvqqmlqssmpmqQ...QN.......HQN.......S...AtlLPtqvqqPLT...........QLQQPVMPHMQsqqqqvgmqqqpnllqrdmqqrlptsgvfqQQNVID.QQKQ....LFQ..QQ....RAMPEASST............................SldSTAqtgNSnggdwqeevyqkikamkdlylldlndmHQKI.................................IGK......LQQ
  682-  767 (65.88/12.67)	...............................................Q...QNM..............MNP......IQ.....PGS...........NLD....P.................................GQNSSM.NSLQ....PISSGPQqvniNPMSLQANTnmlqhqhikqeqllqsqqlkqfqqrqmqQ..QF....................................LQ.KQ................................QF....MQQ
  817-  863 (61.37/11.28)	...............................................Q...QHHAQRSayHQQ..............LK.....PGA.............PFS..P........................................QLLS......SASPQ......MSQHASP............................Q........................................IDQS..................................N....MLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.64|      10|      27|     971|     982|       8
---------------------------------------------------------------------------
  971-  982 (12.54/14.97)	ASVGDigSVVSM
  997- 1006 (17.09/10.62)	AAVGE..DLVAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.64|      15|     112|     911|     926|      11
---------------------------------------------------------------------------
  911-  926 (21.00/13.59)	TQSLAIGTPgISASPL
  940-  954 (25.65/12.13)	VASIGSGKP.VAEQPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      19|     112|    1036|    1086|      12
---------------------------------------------------------------------------
 1036- 1065 (18.58/63.06)	PLNVASSagsvndsfkhSEtSELDSTASSS
 1089- 1107 (31.15/ 7.09)	IDTVVSI..........SE.EDVDPAAASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.62|      17|      27|     549|     565|      15
---------------------------------------------------------------------------
  549-  565 (30.51/15.78)	YDSLPQQPKNEQLEKLK
  574-  590 (32.10/17.02)	YMQFLQIPKNSILPNYK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.43|      34|      47|    1131|    1164|      17
---------------------------------------------------------------------------
 1131- 1164 (59.31/38.54)	KSQYASAQMSPIQPLRLL.VPANYPSCSPILLDKF
 1180- 1214 (53.12/33.62)	KSRFSISLRSLSQPMSLKdIARTWDACAAAVMSDY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14511 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQLFQQQRAMPEASSTSLDSTAQTGNSNGGDWQEE
2) MDSNNWRPTQGASSGVVDPSMESGDWRAQLQADS
3) QQRQMQQQFLQKQQFMQQQQQQQFHQQAKQQQPNGQMQGNQLSQLHQMNDGSDVKLRQQINVKAGAFQQHHAQRSAYHQQLKPGAPFSPQLLSSASPQMSQHASPQIDQSNMLKSASSPFTVPSPSTSSASPIPGELI
4) SLKMLTMENRSQNSMPDAMQSSSAANSVNPSDLGSQVMQQGQQLPISAPSNNIQSGQQMMSQSMHSNIVSAGMQSALPPGSGLQQSTMGNVAGQNSNLQNIQNMSGVQQNAVGNTMGPGNFANQRQQIQGRQQLAPQQQQQQQQQQQQQTQNYLYQQKLHQMAKQTLQQPLQSQMQSHIPQQNLLQPGHQQSVMQPAMVPTSSLSSVVQNQQPGVPQSSQPLMNHQQSVLRQRQQQVQPTQQNPMGQQANATNLQQNQLIGQQNNYSDMQQQQRLMGQQNKLSSVQQPQQLIGQHNNLSSMQQQQSGNSNMQTNQHSVQQMLQSSMPMQQQNHQNSATLLPTQVQQPLTQLQQPVMPHMQSQQQQVGMQQQPNLLQRDMQQRL
5) VINSNRRKPVGPQQQAQALPPAHMQSMQQSQQTHSQLTQVQSQETQMNLQGGSMAAMQPNNMGNLQQSNVPSLSGGSNVQQNMMNPIQPGSNLDPGQNSSMNSLQPISSGPQQVNINPMSLQANTNMLQHQHIKQEQLLQSQQLKQ
485
1
750
87
603
519
34
887
469
748










Molecular Recognition Features






MoRF SequenceStartStop




NANANA