<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14510

Description Putative transcription factor IIS
SequenceMTVRKSGVQMDYWRDYFRSANANIFEIIEGAIMLAASDCPKEFKVRRDSIAQILFSCRLIKCSGCDKEELALPVDNQDHHHDHDHHHHHDGDEGVRYKSKLVDVDRNCSKESSKVINCSRNDDNDDQRNHHVDHQVSNYSYGDAEALTDEIEQESQTFGEVMRIKEIVDNSPDESASVLCNSLRKLQLMSISVETLKATEIGKSVNVLRKHASKDVRQIARTLIEVWKEMVDEWVNATAKMTVSENTPESMNPSVLDEEEGLPSPPLDDLAFLNPHSISLELSEKFFDDVDDYGNPRKNENRNNGKPPPVEKHNVTKLKQQKPLNGTTKVSKPTMVKPPVVGSPLGRRTNPNMDRKLQNPEKPSLPKRPAVPQQRKPMSLDGETEQDKLEATKRKLQERYQQAENVKRQRTIQVMELHDLPKQDVTIRNQHTRPGHHYRHWANSRF
Length446
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.05
Grand average of hydropathy-0.968
Instability index44.40
Isoelectric point6.48
Molecular weight51175.81
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14510
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.26|      10|      29|     332|     341|       1
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  332-  341 (20.24/10.82)	KPTMVKPPVV
  362-  371 (19.02/ 9.76)	KPSLPKRPAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.65|      30|      40|      58|      97|       2
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   58-   92 (56.09/50.97)	RLIKCSGCDKEElalpvDNQDHHHDHDHHHHHDGD
  114-  143 (57.56/30.02)	KVINCSRNDDND.....DQRNHHVDHQVSNYSYGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.52|      18|      19|     259|     276|       4
---------------------------------------------------------------------------
  251-  270 (19.60/ 6.54)	..MNPSvldeEEGLPSPPLDDL
  271-  290 (21.87/ 7.99)	AFLNPHsislE..LSEKFFDDV
  292-  311 (19.05/ 6.19)	DYGNPRknenRNNGKPPPVE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.80|      25|      62|     150|     176|       5
---------------------------------------------------------------------------
  150-  176 (37.76/32.83)	EIEQESQTFGEVMriKEIVDNSPDESA
  215-  239 (44.05/31.10)	DVRQIARTLIEVW..KEMVDEWVNATA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14510 with Med26 domain of Kingdom Viridiplantae
Unable to open file!