<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14509

Description "Putative WW domain, FF domain protein"
SequenceMGPPPNTYPPVAMQFRPAGPPRPPPPYMPIVSQQFLAVRPNMVSQPMQHLPPRPGPPAPPLAHSIAPPPPPPPAAQVFPVPDVQPIRPVMSVSPQAQQAVPAPNNYGPGQSGPRAAISLSYNLPTPAPAQAHVNAEVTSQYQPISSTNMHGFPLGGPAVTPMLQPAEVASSVQVTTDLPKAASDWIEHTSHKGKRYYYNKKTKISSWEKPLELMSPTERADASTNWKEYPAPDGRKYYYNKVTKQSKWKIPDELKLAREQVITKSNTNEQQSTKDPDNETLVPSLTPGSDSPSSQAHEPGPSPVPVPDLIPPVQSGSVLTSEPTASIESSKGTTNAAEETPMTETLPLSTVEIVSANNAVIAENGTIEEFNKGSVTNDSANGAALEEKAFDQETQVYEDKQEAKNAFKALLENANVASDWTWDQTMRVIINDRRYGALRSLSERKQAFTEFIVQKKKQEAEQRRAKHKKAREEFKKMLEESKEITVSTKWSKVAAIFEDDDRFKAIERLKDREDLYDDYITEREKKERSKALEEHKKNRKEYIEFLKSCDFLTASSQWRKVQGRLEADESCLRLEKVDRLEIFQEYIRDLEKDEEEQRKLRAEELRKTERKNRDEFRKLMDEHIASGMLTSKSHWRDYCVKVKESPAYLAVSSNSSGATPKDLFEDVLEELEKQYTEDRDRIKEIVKMRKVSILSTWTIEDFKNAIAEDISSQPVSDVNLKLVFDELLERAQEKEEKEVKRRKRVVDDFYASLTTYKEITSSSRWEDVKPLFEDRLESCVEESVFREMFDKYITELKKARDERKHREDKGKDRDRRTEKSRRDKNNKGKSDKRRRDHSRDSHRHSAERKKTKQLEQQSSASAEYESRHKRHKRDYRRDDQRVSEDHRHDDQRVAEDGELW
Length900
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.07
Grand average of hydropathy-1.047
Instability index62.13
Isoelectric point6.88
Molecular weight103261.35
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14509
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.29|      38|      40|     176|     213|       1
---------------------------------------------------------------------------
  176-  213 (72.61/35.43)	TDLPKAASDWIEHTSHKGKRYYYNKKTKISSWEKPLEL
  217-  254 (73.68/36.04)	TERADASTNWKEYPAPDGRKYYYNKVTKQSKWKIPDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     446.71|      63|      65|     431|     493|       2
---------------------------------------------------------------------------
  377-  413 (38.18/17.87)	..................NDSANGA..AL....EEK...................AFdQETQVYEDK..QEA.........................KNA...FKALLEN
  414-  480 (91.03/53.25)	A.NVASDWTWDQTmrviiNDRRYGALRSLS...ERK..................QAF.TEFIVQKKK..QEAEQR.......RAK...........HKKAREEFKKMLEE
  481-  548 (81.83/47.09)	SKEITVSTKWSKVaaifeDDDRFKAIERLK...DRE..................DLY.DDYITEREK..KERSKA.......LEE...........HKKNRKEYIEFLKS
  549-  622 (80.08/45.92)	CDFLTASSQWRKVqgrleADESCLRLEKV....DRL..................EIF.QEYIRDLEK..DEEEQRklraeelRKT...........ERKNRDEFRKLMDE
  626-  708 (65.65/36.26)	SGMLTSKSHWRDYcvkvkESPAYLAVSSNSsgaTPK..................DLF.EDVLEELEK..QYTEDR......dRIKeivkmrkvsilSTWTIEDFKNAIAE
  709-  755 (48.64/24.87)	..DIS.SQPVSDV....................NLK..................LVF.DELL.E.RA..QEKEEK.......EVK..........rRKRVVDDFYASLTT
  756-  814 (41.31/19.96)	YKEITSSSRWEDV.......................kplfedrlescveesvfrEMF.DKYITELKKarDERKHR.......EDK............GKDRD........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     234.43|      41|      41|      45|      85|       3
---------------------------------------------------------------------------
   17-   53 (60.39/26.44)	PaGPPRP.P.........PPYMPIVS...QQFLAVrPNMVS...QPMQHLPPR
   54-   95 (78.54/36.42)	P.GPPAP.PLAHSIA...PPPPPPPA...AQVFPV.PDVQP..iRPVMSVSPQ
  108-  154 (48.50/19.90)	P.GQSGP.RAAISLSynlPTPAPAQAhvnAEV..T.SQYQPissTNM.HGFPL
  287-  317 (47.00/19.07)	P.GSDSPsSQAHEPG...PSPVP...........V.PDLIP....PVQSGS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.95|      24|      41|     825|     848|       4
---------------------------------------------------------------------------
  825-  848 (45.00/25.45)	NNKGKSDKR..RRDHSR..DSHRHSAER
  865-  892 (33.95/17.42)	ESRHKRHKRdyRRDDQRvsEDHRHDDQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.32|      23|      35|     321|     343|       5
---------------------------------------------------------------------------
  321-  343 (37.27/22.48)	SEPTASIE.........SSKGTTNAAEETPMT
  345-  376 (29.05/16.01)	TLPLSTVEivsannaviAENGTIEEFNKGSVT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14509 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AENGTIEEFNKGSVTNDSANGAALEEKAFDQETQVYE
2) ELKLAREQVITKSNTNEQQSTKDPDNETLVPSLTPGSDSPSSQAHEPGPSPVPVPDLIPPVQSGSVLTSEPTASIESSKGTTNAAEETPMTETLPLSTV
3) KKARDERKHREDKGKDRDRRTEKSRRDKNNKGKSDKRRRDHSRDSHRHSAERKKTKQLEQQSSASAEYESRHKRHKRDYRRDDQRVSEDHRHDDQRVAEDGELW
4) MGPPPNTYPPVAMQFRPAGPPRPPPPYMPIVS
5) VRPNMVSQPMQHLPPRPGPPAPPLAHSIAPPPPPPPAAQVFPVPDVQPIRPVMSVSPQAQQAVPAPNNYGPGQSGPRAAISLSYNLPTPAPAQAHVNAEVTSQYQPISSTNMHGFPLGGPAVTPMLQPAEVASSVQV
362
253
797
1
38
398
351
900
32
174










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKV
2) MPIVSQQFLAVRPNM
3) YYYNK
234
28
196
242
42
200