<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14497

Description Putative mediator complex subunit
SequenceMHHHHQHSQPAGNLTVSSPEPQPSTPEAPPKQVALAMDRLAHAARLIADIRLGADRLLEALFIAGQQPHQSGVNKPLSLIVQEGASMRQYLQDLRTIGRQLEDSGVLNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDKSVDGPVSKKQRGTHTSTQHEEFSDLKTMSDVLTELEKEIPEVKTSTYQRLEWSKRASLLPNDTFDESPKDHNNFQSSRNIISDQIGVIELLIPSVFRAVISLYPTGSLLPDAVAFFSPDEGGSYVHARGVSAFNVFRNITEHAAMAPQHFIGVNAETALYKLLHWICSYQTLFTKVCSKCGKLLSMDKESALLLPPVQRPYRNFSVSKNLSQNSSTKDQSMNDVPAYHIGCFPQE
Length408
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.07
Grand average of hydropathy-0.402
Instability index51.70
Isoelectric point7.76
Molecular weight45339.81
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14497
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.16|      23|      42|      31|      59|       1
---------------------------------------------------------------------------
   31-   53 (36.28/29.31)	KQVALAMDRLAHAARLIADIR.LG
   75-   98 (33.89/14.98)	KPLSLIVQEGASMRQYLQDLRtIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.82|      48|      51|     191|     241|       2
---------------------------------------------------------------------------
  191-  241 (76.98/58.48)	QHEEF.SDLKTMSDVLTELEKEIPEVKTSTyqrLEWSKRASLLPNDTFDESP
  243-  291 (77.85/50.66)	DHNNFqSSRNIISDQIGVIELLIPSVFRAV...ISLYPTGSLLPDAVAFFSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14497 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MHHHHQHSQPAGNLTVSSPEPQPSTPEAPPKQVAL
1
35










Molecular Recognition Features






MoRF SequenceStartStop




NANANA