<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14496

Description Putative phytochrome and flowering time regulatory protein (PFT1)
SequenceMADKKQLILVVEGTAAMGPYWRTIVSDYLEKVIRSFCDNDSLKSSGAVAELALIMFNSHGSYSSCLVQRSGWTRNVDYFFEWLSALHFSGGGFCDAAIAEGLGEVLMMYPYSNVSQNQHNMGVQRHCILVAASNPYPLPTPVYRPPIQKIEPAADNSEAQSESRLSDAETVAKAFSQCSISLSVICPKQLPKLKAVYNAAKRNPASPDPTIDVVKNPHYLVLISETFMEARAALSRSGITTMPSQSPIKVDTSSIPPVSGPPPTSVTSNASLINRQPISAATIPPATVKVEPTTVSSMPPAPVPVTAPSFQHVPPVARAASQGVPTMQTSSPLSVSQEMLSNNETVQEVKPVVNGIQPPLRPTGPVNVSILNNLSQARLMNTALAGGTSMGLPSVIGGNPMAMHMNNMISSGMASTVPISQTVIPPGQSSLTSSIPASSTVSGTALSTVPVPVSVPSSFTSATSNMTGSVSQPLGNLGQPVSGMGQGNLAGPGPVPQMVQSGMGMNQNMMGQPGTGTGTVAGTGGAGNGTGTMMPTPGMSQQVPGMQTLGVNNNTAANVGLPQQTAGGGALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSATASESLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISGQQQPQQLQPQQLQPQQHPQMQQQQQQQQQQQMQHMQQQQQIPPLQQQQQMQQPPQQQQPPPQQPLQQQQQQQMVGTGMNQGYVQGPGGRSQMVSQGQVSSQGPQSMSSGSFIN
Length815
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.04
Grand average of hydropathy-0.283
Instability index58.83
Isoelectric point8.98
Molecular weight86498.48
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.67|      16|      16|     730|     745|       1
---------------------------------------------------------------------------
  712-  727 (26.55/ 8.98)	QQlQPQQHPQMQQQ.QQ
  730-  745 (35.17/15.10)	QQ.QQMQHMQQQQQIPP
  748-  762 (28.49/10.35)	QQ.QQMQQPPQQQQPP.
  763-  778 (29.47/11.05)	PQ.QPLQQQQQQQMVGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     258.39|      55|      55|     204|     258|       3
---------------------------------------------------------------------------
  204-  252 (76.18/34.81)	...................................PAS..PDPTIDV.VKNPHYLVLISETFME....ARAALSRSGITTMPSQSPIKVDT
  253-  337 (61.14/26.38)	SSIP...PVsgppptsvtsnaslinrqpisaatipPATvkVEPTTVS.SMPPAPVPVTAPSFQHvppvARAA..SQGVPTMQTSSPLSVSQ
  341-  401 (46.10/17.95)	SNNE...TV..............qevkpvvngiqpPLR..PTGPVNVsILNN....LSQARLMN...tALAGGTSMGLPSVIGGNPM....
  404-  432 (32.32/10.23)	....................................................HMNNMIS.SGMA....STVPISQTVIP..PGQSSL...T
  433-  472 (42.66/16.02)	SSIPassTV..........................SGT..ALSTVPV....P...VSVPSSFTS....A.....TSNMTGSVSQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.41|      24|      50|     495|     518|       4
---------------------------------------------------------------------------
  488-  507 (34.29/10.90)	NLAG.PG....pVPQMVQSGMGMNQ
  508-  531 (36.63/12.14)	NMMGQPGTGTGtVAGTGGAGNG.TG
  532-  553 (40.50/14.19)	TMMPTPGMSQQ.VPGM.QT.LGVNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.79|      18|      49|     641|     662|       6
---------------------------------------------------------------------------
  641-  662 (24.64/21.70)	DFLVFRAmnqhGFLGQLQEKKL
  692-  709 (33.15/17.33)	DMVVFKP....QISGQQQPQQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14496 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRSGITTMPSQSPIKVDTSSIPPVSGPPPTSVTSNASLINRQPI
2) ASTVPISQTVIPPGQSSLTSSIPASSTVSGTALSTVPVPVSVPSSFTSATSNMTGSVSQPLGNLGQPVSGMGQGNLAGPGPVPQMVQSGMGMNQNMMGQPGTGTGTVAGTGGAGNGTGTMMPTPGMSQQVPGMQTLGVNNNTAANVGLPQQTAG
3) ATIPPATVKVEPTTVSSMPPAPVPVTAPSFQHVPPVARAASQGVPTMQTSSPLSVSQEMLSNNETVQEVKPVVNGIQPPLRPTGPVNVS
4) QPQQLQPQQLQPQQHPQMQQQQQQQQQQQMQHMQQQQQIPPLQQQQQMQQPPQQQQPPPQQPLQQQQQQQMVGTGMNQGYVQGPGGRSQMVSQGQVSSQGPQSMSSGSFIN
233
414
281
705
278
567
369
815










Molecular Recognition Features






MoRF SequenceStartStop




1) TGMNQGYVQ
778
786