<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14493

Description Putative sensitive to freezing 6
SequenceMTASSNEHQQSSSPLDATATSAVVEPADSGAIVAADSGAGGGDDSDMDKGGGTAGDPMDEDVVNNPATVFCIRLKQPRANLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTESTVFNVIADSPRDSVQFIEWSPSSCPRALLIANFHGRITIWTQPSYGSGSLGKDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSRSSSSTKSTFEEKFLSQQPQAPAGWPNFLCVCSVFSSGSIQLHWSQWPSNQSGTSKWFCTSKGLLGAGPSGIMAADAIVTDSGALHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTNTSSGIPPSLNPSSWDGFAPLASYLFSWQEYLYLEAKQGKKHTEQDYSDMVALHCSPVSNFSAYVSPEASAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLEPVVLHPIFGNPTSSFGGQPPMQTVWVTKVNKSIPATDYLKSNQTGPSGSTPEGSLNTSEPGIEESKRVVFDPFDLPSDVRTLARIVYSAHGGEVAVAFLRGGIHIFSGSSFTPVDNYQINVVSAIASPAFSSTSCCSATVWHDTIKDCTMLKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNNVIAVLDADFHSLPSTQHRQQYGPRLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVVEPWLASGETLNSLDPESMAIDPALVLNIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVNTGTGGNRNMVISPTQSTGTPGAAQGGQNGSASSTASTPIQAWVQGAIAKISSTSDGVPNATPNPVTGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRRIHLPRFLGAPQRNNTDSAVHKPQSGGPGKVEEISSVSTKATSALGGQVGSGAKSSEDGPANKSRYGSGNAGQGYTFDEVKVLFLILMDLCKRTSGLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNTFGGPWSDPDDLGVDDSSRLTTSTDWASFSSVDGNDVHHEAQRLWPRKRRMSERDAAFGLNTSVGLGAFLGIMGSRRDVTTAVWKTGLEGVWYKCIRCLRQTSAFGSQGGNSSTSTQNERETWWISRWVHGCPMCGGTWVRVV
Length1241
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.08
Grand average of hydropathy-0.192
Instability index43.77
Isoelectric point5.98
Molecular weight133268.13
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14493
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.43|      35|      74|     185|     219|       1
---------------------------------------------------------------------------
  185-  219 (65.47/32.62)	YGSGSLGKDASCWQREHEWRQDIAVVTKWLSGVSP
  260-  294 (66.96/33.53)	FSSGSIQLHWSQWPSNQSGTSKWFCTSKGLLGAGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     225.85|      56|     228|     931|     987|       2
---------------------------------------------------------------------------
  824-  853 (38.03/17.12)	..........GNRNMVISP...TQStGTPG.............AAQGGQNGS.ASST..
  931-  987 (94.61/58.21)	IHLPRFLG.APQRNNTDSAVHKPQS.GGPGkVEEISSVSTKATSALGGQVGSGAKSSED
 1162- 1216 (93.21/53.37)	VGLGAFLGiMGSRRDVTTAVWK..T.GLEG.VWYKCIRCLRQTSAFGSQGGNSSTSTQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.38|      27|     230|      97|     126|       3
---------------------------------------------------------------------------
   97-  123 (51.74/20.62)	VAWC...GKLN...AIACASETCARIPSSNANP
  324-  354 (38.02/12.52)	VVWEvtpGPGNgfqATPK.TNTSSGIPPS.LNP
  860-  883 (39.62/15.83)	.AWV.....QG...AIAKISSTSDGVPNATPNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.92|      25|     112|     399|     432|       4
---------------------------------------------------------------------------
  404-  432 (40.15/36.18)	SAYVSPEAsaqsAATTTW.GSGVTAVAFDP
  747-  772 (41.77/17.29)	SALVNPSA....LVVEPWlASGETLNSLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.39|      13|     114|     798|     810|       5
---------------------------------------------------------------------------
  798-  810 (25.79/14.77)	HFITRLRRYASFC
  913-  925 (26.60/15.43)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.01|      61|     564|     470|     551|       8
---------------------------------------------------------------------------
  470-  551 (99.64/95.39)	SSLEPVVLHPIFGNPT.......SSFGgqPPMQTvwvtkvnksipatdylksnQTGPSGSTPEG....SLNTSEPGIEESKRVVF.....DPFDLPSD
 1037- 1113 (100.37/58.61)	SSNIQVRLHYIDGNYTvlpevveASLG..PHMQN...................MPRPRGADAAGlllrELELHPPAEEWHRRNTFggpwsDPDDLGVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.83|      13|     558|     652|     670|      13
---------------------------------------------------------------------------
  652-  670 (22.59/22.15)	ER.FWWslmvgVDWWdAVGC
 1217- 1230 (27.24/11.19)	EReTWW.....ISRW.VHGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14493 with Med16 domain of Kingdom Viridiplantae
Unable to open file!