<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14491

Description Putative mediator complex subunit Med23
SequenceMFRAPTTSGGGGGAGVPLTSITTQSPNPADMADQSHHRAATTSARAFQFHPARPAIIDLFNLYLGRSGREKADDLVREPPNKTQKRVTALNRDLPPRNEQFLVDFEQLQNQFPDREPLRTVSESVLISLVIQCSNHAPRAEFLLFALRNLYNIGYINWDTFLPSLLSSVSSAEMSVSISSTTSPPPTISSTSLAQTGMLPSSTAIPSSNFQTSSPASPLISVHGIGSPSQSANEPSTTPLSPVKSSDINNSGHHSRSNMLTRDNAISSLRQLCCKIIFSALEVNLKPSTHADIFNHMMNWLVNWDQQQQGSDEVDGIKSWKRDKALFEWLHNCLDVIWLLVDDKKCRVPFYELVRSGLQFLQNISDDEALFTLILEIHRRRDMMAMHMQMLDQHIHCPTFGNQRLLSQATTSVSSEAAINMRYSPITYPSVLGEPLHGEDIAVCIQKGSLDWERALRCIRHALRSTPAPDWWRRVLLVAPSNRQHPQGPTPGAVFTSDMICEANIDRIVELLRLTNSEINCWQEWLVYSDVFFFLVKSGCIDFVDFVDKLVLRLSEDDHQILRTNHVTWLLAQIIRVELVMHALNTDPRRVETTRKVLSFHKEDRSSDPNNPQSILLDFISSCQNLRIWSLNSSTREYLNAEQLQKGKQIDEWWRQVTKGDHMMDYMNLDDRSIGMFWVVSYTMAQPASDTVMSWLTSAGHAELPGPNLQTNERITMMREVHPVPISLLSGFSINLCLKLAFQMEEAMFSGEHVPNIAMVETYTRLLLLQPHSLFRSHLSHLHQKNPSILNKPSATLLVLEILNYRLFSLYRYQGKSKTLMYDVTKILSTLKGKRGDHRVFRLAENLCMNLILSLREFFFVRKEGKGPTEFTETLNRITVVNLAIIIKTRGIADAEHLLYLQTMLEQILATSQHTWSGKTLRYFPPVLCEALIGRIDKRGLAIQAWQQAESTVINQCTQLLTPSANPTYVMTYINTSFPQHRQYLCAGAWVLMHGHPENINNANLGRVLREFSPEEVTANIYSMVDVLLHNMQLESQHGHTLQDPIMKACANLAYFIWNHELLPLDILLLALIDRDDDPHALRIVVNLLERQELQQRIKFYVANRGKPEHWLQNGIFKRIELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIIYRLIENDAADAADRVLQFYSTFLHYYPLNVTFVRDILAYFYGHLPAKLIFRILNVLDIKKMPFSESFPQHVNSSNAMCPPLEYFASLLCNLVHNVIPQCNSKADPLNNGTRTFINRNPTASQPGSTNTFEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVTAAQIVSALVQIIIHIQPTLTQSNHGYHGSTTSSGQGSALPASPSGGSTDSLGRCRQSVTGMGLVTRSGYASQQLSCLMIQACGLLLAQLPTEFHIQLYAEVSRVIKESWWLTDGKRSVSELDSVVGYALLDPTWAAQDNTSTVIGNVVALLHSFFSNLPQEWLDKTHLIVNHLRPIKSVAVLRIAFRIVGPLLPRLANAHNLFSKTLELLLNMMVDVFGSHSQPSTPVEASEITDLIDFLHHIVHYEGQGGPVQPNSKARPDVLALCGRAIENLRSDVQHLLSHLKTDANGSIYAATHPKLFQSPS
Length1623
PositionTail
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.08
Grand average of hydropathy-0.143
Instability index47.83
Isoelectric point6.74
Molecular weight182831.32
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14491
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     379.57|     123|     180|     918|    1064|       1
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  919-  980 (77.33/36.03)	........................................................................KTLRYFP..................PVLCE...ALIGRIDK.RGLAIQ.............................................AWQQAESTVINQCTQLLTPSANPTYVMTYINTSFPQ
  981- 1165 (145.09/122.58)	HR..QYLCAgawvLMHGHPENInnANLGRVLREFSPEEVTANIYSMVDVL.LHNMQL.ESQHGHTLQDPIM........kacanlayfiwnhellplDILLL...ALIDRDDDpHALRIVvnllerqelqqrikfyvanrgkpehwlqngifkrielqkalgnhlSWKERYPTFFDDIAARLLP.VIPLIIYRLIENDAAD
 1168- 1284 (157.15/89.85)	DRvlQFYST....FLHYYPLNV..TFVRDILAYFYGHLPAKLIFRILNVLdIKKMPFsESFPQHVNSSNAMcPPLEYFA..................SLLCNlvhNVIPQCNS.KA...D.............................................PLNNGTRTFINRNPTASQPGSTNTF...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     543.71|     168|     180|     470|     649|       2
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  470-  631 (230.77/164.66)	......................DWWRRV.....LLvapsNRQHPQ.GPTPGAVF..T.SDMICEANIDRIVELL......RLTNSEINCWQEWLVYSDvFFFLVK..SGCIDFV.DFVDKL...................VLRLS.EDDHQILRTNHVTWllAQIIRVELVMHALNTDPRRVetTRKVLSFHKEDRSSDPNNPQSILLdfISSCQNLRIWSL
  632-  810 (242.71/146.19)	NSSTREYLNAEQLQ..KGKqidEWWRQVtkgdhMM....DYMNLD.DRSIG.MFwvV.SYTMAQPASDTVMSWLtsaghaELPGPNLQTNERITMMRE.....VH..PVPISLLsGFSINL...................CLKLAfQMEEAMFSGEHV....PNIAMVETYTRLLLLQPHSL..FRSHLSHLHQKNPSILNKPSATLL..VLEILNYRLFSL
  816-  916 (70.23/34.78)	KSKTLMYDVTKILStlKGK..........................rG..DHRVF..RlAENLCMNLI..........................LSLRE.FFFVRKegKGPTEFT.ETLNRItvvnlaiiiktrgiadaehLLYLQ.TMLEQILATSQHTW..............................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.30|      47|    1140|     199|     267|       6
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  221-  267 (83.11/66.01)	SVHGIGSPSQSANEPSTTPLSPV.KSSDINNSGHHSRSNM..LTRDNAIS
 1339- 1388 (75.19/29.74)	SNHGYHGSTTSSGQGSALPASPSgGSTDSLGRCRQSVTGMglVTRSGYAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.36|      19|      20|     163|     181|       9
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  163-  181 (31.15/19.92)	PSLLSSVSSAEMSVSISST
  185-  203 (34.20/22.66)	PPTISSTSLAQTGMLPSST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14491 with Med23 domain of Kingdom Viridiplantae
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