<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14488

Description "Putative mediator complex, subunit Med25, von Willebrand factor type A"
SequenceMDAEKKQLVLVVEGTAALGPHWRIIVSDYLEKVIRKFCGNEAKEVGSSIVELALVQFNAHGSYSSCLVQRSGWARNVDYFLEWLSCMQFGGGGFCDAAIAEGLAEVLMMCPPPNGTDTRPTDVVQRHCILVAASNPYPLPTPVYRPPNKSDTQSENRLFDAETIAKSFPQSCVSLSVICPKQLPKLKAIYNAGKRNPSATVPTVDIVKTPHYLILISEDFTEACDALSPSVTTNSPSSQNPSSMNITSVSPVNKSLLAQQPVPLATVKAVRIFNPLFYTIYNHVCDFNFFNLILQEPCTVSPITSPQAKTYSPSPTSQERISRNDHLQDMKPVVSNIQQPLRPAGPVNVSILNNLSQARLASPTVLAGGTATGISSIGGQAIHMSNMIAGSVSAPLSGTAQVAQHVGSMMAAPGMSQQVQGMQSVGVDNNMGTNVGVSQLTSSALQAGRPKYLKIWEVCKVATLYLKSM
Length469
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.06
Grand average of hydropathy-0.028
Instability index54.32
Isoelectric point8.38
Molecular weight50368.26
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14488
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     174.08|      39|      78|     238|     276|       2
---------------------------------------------------------------------------
  133-  150 (20.05/ 6.43)	........................................ASNPY.PLPT.PVYRPPNKS
  154-  210 (39.77/19.60)	SENRlfDAET..IAKSFPqscVSLSVIcpkqlpklkaiynAGKRN.PSATVPTVDIVKTP
  238-  276 (65.68/36.90)	SQNP..SSMN..ITSVSP...VNKSLL.............AQQPV.PLATVKAVRIFNPL
  317-  355 (48.59/25.49)	SQER..ISRNdhLQDMKP...VVSNI...............QQPLrPAGPVN.VSILNNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.35|      27|      50|     360|     394|       3
---------------------------------------------------------------------------
  368-  394 (47.05/26.16)	GGTATGISSIGGQ..AIHMSNMIAGSVSA
  397-  425 (43.30/31.32)	SGTAQVAQHVGSMmaAPGMSQQVQGMQSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14488 with Med25 domain of Kingdom Viridiplantae
Unable to open file!