<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14487

Description "Putative WW domain, FF domain protein"
SequenceMLNSFEFLTEPITRSVWASSHPTNYDREKNSGKNKQKALNQSTRVSKDTPPKTLSSVVVRRFRRRRAPPLASLQLFTTVICHIFILGLPSASVGFRPQHRLVYNFTNKIMESTSQGPGSDPPVEGKSSTSLTPTVAPASVAGTPTLKDEGIVGTESTHDSDSANRVNSHGHVASTPSFSYNVPPNASINSESPHPSSSTAMVNSPGSSSLPRPPVPASSGPSFSYNIPQADIVSFQSTMVADSAKSEAPKNVSTSATSLQPPVSGHPTHPGSFMQGMNTQVRPPPSSVAVPREVASDAANFSYNGNHQLLQKDQSNVTGPTVSPATSVPHPVSQHAYSPLGAASSNPNTASPPFRMPPGPPFQPPPGVPRTPVTPQQPFYGTYASNPPMVGPPQGVWLQSPPIGSLSRPQLLPYPPAFPGPFPLSAQRTPLPLVQPSNAQPPSTSIGVSGSVAQELPPGTYNNKHLNAVGVKEESVAGDLLDAWSAHRTETGTIYYYNAVTGQSTYQKPVGFKGEPDKVFAQPTPISWEKCAGTDWSLVTTNDGKRYYYNAKTKLSSWQIPADVAELRKKQESDALKEQSISVQNVTTLTEKGSGPLSLNAPAITTGGRDAISPVSSSALDLIKKKLQDSAAPATTESDLNGSTPVDQAGKGPHGENGKDKVKDDNGDGNVSNSSSDSDDVDTGPTKEERAIQFKEMLKERGVAPFSKWEKELPKFVFDPRFKAIPSYSARRAIFDHFVRTRAEEERKEKRAAQKAAIEGYKQLLDEAKEDITHNTDYQTFKRKWGHDPRFEALDRKEREALLNERVIPLKRSVEEEARAKRAAIVSSFKSMLRENKDISSTSRWSKVKDMFRNDPRYKSVKHEDREDIFNEYISELKESGVEAERAAKAKRDEEEKLKERERVLRKRKEREEQEVERVRSKALRKEAIESYQALLVETIKDPQISWMDAKPKLEKDPQGRAANPYLDQSDLEKLFREHTKLLHDRCANEYKALLAEVITTDAATKEYEDGKTVFTSWSTARHLLKDDTRYNKMPRKDREPLWRRHVEDLQRRRKSTVDQDMEKHGDGKTASLVDSRKHLSGYKRSHDRR
Length1090
PositionUnknown
OrganismHelianthus annuus (Common sunflower)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity0.07
Grand average of hydropathy-0.823
Instability index51.74
Isoelectric point9.24
Molecular weight120554.22
Publications
PubMed=28538728

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14487
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     400.73|      54|      55|     358|     411|       1
---------------------------------------------------------------------------
  174-  215 (55.46/20.44)	STPSFsyNVP.P...NASINSESPH...P.....SSS..TA..MV........NSPGSSSLPRPPV
  219-  259 (45.08/15.25)	SGPSF....S.Y...NIPQADIV.....SFQSTMVAD..SA..KSEAPKNV...STSATSL.....
  260-  309 (57.77/21.60)	.......QPPvS...GHPTHPGSFM..QGM.NTQVRP..PP.sSVAVPREVASDAANFSYNGNHQL
  318-  353 (35.24/10.33)	TGPTV..SPA.T...SVPH.PVSQHaySPL.GAASSN..PN..TASPP..................
  358-  411 (109.00/47.21)	PGPPF..QPP.P...GVPRTPVTPQ..QPFYGTYASN..PP..MVGPPQGVWLQSPPIGSLSRPQL
  413-  466 (58.30/21.86)	PYPPA..FPG.PfplSAQRTPLPLV..QP......SNaqPPstSIGVSGSVAQELPP.GTYNNKHL
  491-  526 (39.88/12.66)	TGTIY..YYN..........AVTGQ......STYQKP..VG..FKGEPDKVFAQPTPI........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.33|      15|      15|     883|     897|       2
---------------------------------------------------------------------------
  803-  818 (16.95/ 8.01)	LNERVIPLKRSvEEEA
  883-  897 (23.49/14.07)	EAERAAKAKRD.EEEK
  900-  914 (22.88/13.51)	ERERVLRKRKE.REEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     296.67|      52|      56|     962|    1013|       3
---------------------------------------------------------------------------
  690-  714 (23.81/ 9.26)	................................................RAIQ.FKEMLKE..RGVAPFSKWEKELP
  747-  783 (41.01/21.26)	.......................RKEK................RAAQKAAIEGYKQLLDEAKEDITHNTDYQTFKR
  789-  850 (57.40/32.70)	PRF......EA..LDRKEREAL.....lnerviplkrsveeeaRAKRAAIVSSFKSMLREN.KDISSTSRWSKVKD
  918-  952 (43.60/23.07)	.......................RVRS................KALRKEAIESYQALLVETIKDPQIS..WMDAKP
  962- 1013 (75.95/45.64)	AAN......PY..LDQSDLEKLFREHT................KLLHDRCANEYKALLAEVITTDAATKEYEDGKT
 1021- 1070 (54.90/30.95)	ARHllkddtRYnkMPRKDREPLWRRHV................EDLQRR....RKS......TVDQDMEKHGDGKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      59.40|      12|      15|     641|     652|       4
---------------------------------------------------------------------------
  641-  652 (22.02/12.29)	NGSTPV.DQAGKG
  657-  669 (17.70/ 8.35)	NGKDKVkDDNGDG
  673-  684 (19.67/10.14)	NSSSDS.DDVDTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.47|      14|      15|     112|     125|       5
---------------------------------------------------------------------------
  112-  125 (27.86/15.71)	STSQGPGSDP.PVEG
  128-  142 (20.61/ 9.41)	STSLTPTVAPaSVAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.73|      16|      16|     586|     601|       7
---------------------------------------------------------------------------
  586-  601 (26.22/13.83)	VTTLTEKGSGPLSLNA
  604-  619 (26.50/14.06)	ITTGGRDAISPVSSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.86|      23|     134|     716|     739|       8
---------------------------------------------------------------------------
  716-  739 (37.80/31.51)	FVFDPRFKAIpSYSARRAIFDHFV
  852-  874 (43.06/29.93)	FRNDPRYKSV.KHEDREDIFNEYI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14487 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELRKKQESDALKEQSISVQNVTTLTEKGSGPLSLNAPAITTGGRDAI
2) FTNKIMESTSQGPGSDPPVEGKSSTSLTPTVAPASVAGTPTLKDEGIVGTESTHDSDSANRVNSHGHVASTPSFSYNVPPNASINSESPHPSSSTAMVNSPGSSSLPRPPVPASSGPSFSYNIP
3) KLQDSAAPATTESDLNGSTPVDQAGKGPHGENGKDKVKDDNGDGNVSNSSSDSDDVDTGPTKEERAIQFKEM
4) PAFPGPFPLSAQRTPLPLVQPSNAQPPSTSIGVSGSVAQELPPGTYNNKHLNA
5) PRKDREPLWRRHVEDLQRRRKSTVDQDMEKHGDGKTASLVDSRKHLSGYKRSHDRR
6) SFQSTMVADSAKSEAPKNVSTSATSLQPPVSGHPTHPGSFMQGMNTQVRPPPSSVAVPREVASDAANFSYNGNHQLLQKDQSNVTGPTVSPATSVPHPVSQHAYSPLGAASSNPNTASPPFRMPPGPPFQPPPGVPRTPVTPQQPFYGTYASN
7) SSHPTNYDREKNSGKNKQKALNQSTRVSKDTPPKTLSSVVVRR
566
105
626
416
1035
234
19
612
228
697
468
1090
386
61










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
622
627