<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p> Detailed information on MDP14486
Description
Putative luminal-binding protein Sequence MARSGVALAIILIGCLSAISIAKEEANKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTESERLIGEAAKNQAAVNAERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKLKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTVVSIQVFEGERSLTKDCRLLGKFDLSGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKAEKITITNEKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNALETYVYNMKNQISDKDKLADKLEADEKDKIEAATKEALEWLDDNQSAEKEEYDEKLKEVEAVCNPIITAVYQRTGGAAPEGGEDDEEHDEL Length 658 Position Unknown Organism Helianthus annuus (Common sunflower) Kingdom Viridiplantae Lineage Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> campanulids> Asterales> Asteraceae> Asteroideae>
Heliantheae alliance> Heliantheae> Helianthus.
Aromaticity 0.06 Grand average of hydropathy -0.424 Instability index 29.78 Isoelectric point 5.09 Molecular weight 72461.42 Publications PubMed=28538728
Function
Annotated function
GO - Cellular Component cytoplasm GO:0005737 IBA:GO_Central
endoplasmic reticulum chaperone complex GO:0034663 IBA:GO_Central
endoplasmic reticulum lumen GO:0005788 IBA:GO_Central
membrane GO:0016020 IBA:GO_Central
nucleus GO:0005634 IBA:GO_Central
GO - Biological Function ATP binding GO:0005524 IBA:GO_Central
ATPase activity GO:0016887 IBA:GO_Central
heat shock protein binding GO:0031072 IBA:GO_Central
misfolded protein binding GO:0051787 IBA:GO_Central
protein folding chaperone GO:0044183 IBA:GO_Central
unfolded protein binding GO:0051082 IBA:GO_Central
GO - Biological Process cellular response to unfolded protein GO:0034620 IBA:GO_Central
chaperone cofactor-dependent protein refolding GO:0051085 IBA:GO_Central
endoplasmic reticulum unfolded protein response GO:0030968 IBA:GO_Central
protein refolding GO:0042026 IBA:GO_Central
ubiquitin-dependent ERAD pathway GO:0030433 IBA:GO_Central
Interaction
Repeat regions
Repeats
>MDP14486
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.30| 11| 27| 226| 236| 1
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226- 236 (20.46/10.66) LGGGTFDVSIL
254- 264 (21.85/11.83) LGGEDFDQRIM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.69| 13| 15| 180| 194| 2
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180- 192 (19.48/ 6.66) AQRQATKDAGVIA
197- 209 (19.20/10.74) ARIINEPTAAAIA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 71.01| 38| 193| 276| 317| 3
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276- 293 (12.75/ 6.59) ..................................GK..DISKDNRAlGKLR........REA
294- 317 (14.60/15.53) ERAKRAlSSQHQVRVEIESlfDGV......................................
491- 548 (43.66/27.49) APAPRG.TPQIEVTFEVDA..NGIlnvkaedkgtGKaeKITITNEK.GRLSqeeiermvREA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 96.10| 26| 27| 574| 599| 4
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553- 570 (18.80/ 8.00) .......EEDKKV.KEKIDARNA.LET
574- 599 (41.18/27.10) NMKNQISDKDKLADKLEADEKDK.IEA
603- 628 (36.11/22.78) EALEWLDD.NQSAEKEEYDEKLKeVEA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.17| 14| 28| 95| 108| 6
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95- 108 (23.64/13.23) DVKRLIGRKFEDKE
124- 137 (23.53/13.13) DGKPYIQVKLKDGE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.35| 25| 28| 382| 406| 7
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382- 406 (42.32/26.60) GKEPNKGVNPDEA.VAFGAAVQGGIL
411- 436 (33.03/19.13) GDETKDILLLDVApLTLGIETVGGVM
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Explaination for Stockholm format
The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column. #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP14486 with Med37 domain of Kingdom Viridiplantae
Intrinsically Disordered Regions
IDR Sequence Start Stop
NA NA NA