<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14478

Description Uncharacterized protein
SequenceMASPAWLPQEVKPSVSQSPVSVSPAGGASTQTSASLASSVGLHTSNSSGGSTTDSIQEPLQAKFSNAPSFAVPASSFSYGVPPNANISFGASQQSSPGSAIQSNPPASPRVQPPVPGLSSSASPSFSYNIPKSGFSFPNNQQFQSGMNIPPAVAQETGNVSLSSTSSHSGSLPAPTSSSSTMNLSSAPNMGTTTSWVPTGPSFNLTSGMPGTPGTPGPPGIAHPVQISFNPTAPSAPIDSSSVALRPSMQIAPVASSAVQPQVGAPYLSLSSMGAPPQGVWLQSPQIGGFPRPPFLPYPAAFPGPFPLPAHVMPLPSVPLPDSQPPGVIPVGNTAAISSPSAASGHQLAGSSGIQIELPHPGIDNRKQFHDAGNENRASVNEQLDAWTAHKTETGVVYYYNALTGESTYDKPPGFKEEPDKVSMQPTPVSTVNLSGTDWVLVTTSDGKKFYHNGKTKVSSWQIPNEVIELRKKQDADVPKEHPVSIPINNVMTEKGSAPISLTAPAINTGGREAMAFKPSAVQGTSSALDLIKKKLQDSGAPVTSSPVPAPSESNGSRGVESTPKGQQSDNSKDKLKDINGDGNLSDSSSDSEDADSGPTKEECITQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHKTDYQSFRKKWANDPRFEALDRKDREHLLNERVLPLKRAAEEKAQAVRAAAATSFKSMLQEKGDITVSSRWSRVKDSLRNDPRYKSLRHEDREILFNQYISDLKAVEEEAEREAKAKRDEQEKLRERERELRKRKEREEQETERVRLKVRRKEAVATFQALLVETIKDPQASWTGSKPKLEKDPQRRAANPDLEPSDMEKLFREHIKRLNERCAHEFRALLAEVLTAEAASQETEDGKTVLNSWSTAKRLLKPDPRYNKMARKEREVLWRRFSEEMLRKQKSALDHKEDRKTDAKSRSSVDSGRVPFGSRGTHDRR
Length1004
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.735
Instability index60.02
Isoelectric point9.02
Molecular weight109233.68
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14478
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     490.83|      61|      61|     167|     227|       1
---------------------------------------------------------------------------
    7-   62 (42.05/13.64)	....................LP.QevkP..............SVSQS.....PVSVS..PAGGAST.Q.........TS.ASLASSVGLhtSNSS............GG......STTDS.IQEPLQA
   65-  117 (52.60/19.01)	SN....AP...........SFA.V...P..............ASSFS......YG.............V....P......PNANISFGAsqQSSP............GSaiqsnpPASPR.VQPPVPG
  123-  166 (45.19/15.24)	SP....SF...........SYN.I...P..............KSGFS.....F....................P...NN.QQFQ..SGM..NIPP............AV......AQETGnVSLSSTS
  167-  227 (110.84/48.66)	SH....SG...........SLP.A...P..............TSSSS.....TMNLSSAPNMGTTTSWV....P...TG.PSFNLTSGM..PGTP............GT......PGPPG.IAHPVQI
  228-  301 (43.91/14.59)	SF....NP...........TAPsA...P..............IDSSSvalrpSMQI..AP...VASSAV...qP..qVGaPYLSL.SSM...GAPpqgvwlqspqigGF......PRPPF.LPYPAA.
  302-  337 (42.86/14.05)	.F....PG...........PFP.L...P.................AH.....VMPL........................PSVPLPDSQ..P.......................PGVIP.VGNTAAI
  338-  414 (32.95/ 9.01)	SSpsaaSGhqlagssgiqiELP.H...PgidnrkqfhdagneNRASV.....NEQLDAWTAHKTETGVV...........YYYN...AL..TGES............TY......DKPPG........
  415-  472 (48.63/16.99)	...................FKE.E...P..............DKVSM.....QPTPVSTVNL.SGTDWVlvttS...DG.KKF.YHNGK..TKVS............SW......QIPNE.VIE.LRK
  473-  521 (38.07/11.61)	KQ....DA...........DVP.K...E..............HPVSI.....PIN.....NVMTEKGSA....PislTA.PAIN.TGGR..EAMA............FK......PSA..........
  523-  564 (33.73/ 9.40)	......QG...........TSS.A...L..............DLIKK.....KLQDSGAP...VTSSPV....P...AP.SESNGSRGV..ESTP.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     410.17|      66|      66|     668|     733|       2
---------------------------------------------------------------------------
  579-  663 (51.11/27.18)	....INGDGNLSDSSsdSEDA.DSgptKeeciT...QFKEMLKergvapfskwekelpKIVFDPRFKA....IPSHSARRS...LFEHY.VK.TRAEEERKE
  668-  733 (108.93/66.76)	QKAAIEGFKQLLDEA..SEDI.DH...K....T...DYQSFRK...............KWANDPRFEA....LDRKDREHL...LNERV.LPLKRAAEEKAQ
  736-  795 (80.33/47.19)	RAAAATSFKSMLQE...KGDI.TV...S....S...RWSRVKD...............SLRNDPRYKS....LRHEDREIL...FNQYI.SDLK.AVE....
  796-  839 (35.22/16.30)	............EEA..EREA.KA...K....R...DEQ...E...............KLRERER.EL....RKRKEREEQ...ETERVrLKVRR.......
  840-  903 (77.63/45.34)	.KEAVATFQALLVET..IK...DP...Q....A...SWTGSKP...............KLEKDPQRRAanpdLEPSDMEKL...FREHI....KRLNERCAH
  909-  971 (56.95/31.18)	LAEVLTA.....EAA..SQETeDG...K....TvlnSWSTAKR...............LLKPDPRYNK....MARKEREVLwrrFSEEM.LRKQKSA.....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14478 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEREAKAKRDEQEKLRERERELRKRKEREEQETERVR
2) ALDLIKKKLQDSGAPVTSSPVPAPSESNGSRGVESTPKGQQSDNSKDKLKDINGDGNLSDSSSDSEDADSGPTKEECITQFK
3) ANISFGASQQSSPGSAIQSNPPASPRVQPPVPGLSSSAS
4) FPNNQQFQSGMNIPPAVAQETGNVSLSSTSSHSGSLPAPTSSSSTMNLSSAPNMGTTTSWVPTGPSFNLTSGMPGTPGTPGPPGIAHPVQISFNPTAPSAPIDSSSVALRP
5) KQKSALDHKEDRKTDAKSRSSVDSGRVPFGSRGTHDRR
6) LAGSSGIQIELPHPGIDNRKQFHDAGNENRASVNEQLDA
7) MASPAWLPQEVKPSVSQSPVSVSPAGGASTQTSASLASSVGLHTSNSSGGSTTDSIQEPLQAKFS
8) QIPNEVIELRKKQDADVPKEHPVSIPINNVMTEKGSAPISLTAPAINTGGREAMAFKPSAVQ
9) SWTGSKPKLEKDPQRRAANPDLEPSDMEKL
798
528
85
137
967
348
1
462
860
834
609
123
247
1004
386
65
523
889










Molecular Recognition Features






MoRF SequenceStartStop




1) KIVFDPRFKA
2) LDLIKKKL
3) LFEHYV
4) MASPAWLPQE
5) VLWRRF
629
529
648
1
955
638
536
653
10
960