<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14475

Description Uncharacterized protein
SequenceMHPASRFLHLHSLTVCLPMQTSVLEPLSSHHLAIQSNPPASPRVQPPVPGLSSSASPSFSYNIPKSGFSFPNNQQFQSGMNIPPAVAQETGNVSLSSTSSHSGSLPAPTSSSSTMNLSSAPNMGTTTSWVPTGPSFNLTSGMPGTPGTPGPPGIAHPVQISFNPTAPSAPIDSSSVALRPSMQIAPVASSAVQPQVGAPYLSLSSMGAPPQGVWLQSPQIGGFPRPPFLPYPAAFPGPFPLPAHVMPLPSVPLPDSQPPGVIPVGNTAAISSPSAASGHQLAGSSGIQIELPHPGIDNRKQFHDAGNENRASVNEQLDAWTAHKTETGVVYYYNALTGESTYDKPPGFKEEPDKVSMQPTPVSTVNLSGTDWVLVTTSDGKKFYHNGKTKVSSWQIPNEVIELRKKQDADVPKEHPVSIPINNVMTEKGSAPISLTAPAINTGGREAMAFKPSAVQGTSSALDLIKKKLQDSGAPVTSSPVPAPSESNGSRGVESTPKGQQSDNSKDKLKDINGDGNLSDSSSDSEDADSGPTKEECITQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHKTDYQSFRKKWANDPRFEALDRKDREHLLNERVLPLKRAAEEKAQAVRAAAATSFKSMLQEKGDITVSSRWSRVKDSLRNDPRYKSLRHEDREILFNQYISDLKAVEEEAEREAKAKRDEQEKLRERERELRKRKEREEQETERVRLKVRRKEAVATFQALLVETIKDPQASWTGSKPKLEKDPQRRAANPDLEPSDMEKLFREHIKRLNERCAHEFRALLAEVLTAEAASQETEDGKTVLNSWSTAKRLLKPDPRYNKMARKEREVLWRRFSEEMLRKQKSALDHKEDRKTDAKSRSSVDSGRVPFGSRGTHDRR
Length937
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.759
Instability index57.00
Isoelectric point9.06
Molecular weight103126.51
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14475
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     389.38|      61|      61|     100|     160|       1
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   11-   99 (43.20/17.11)	.HSLTvcLP.M.QTSvleplSSH.....HLAI.......QSNPPAsprvqppvpGLSSSAS.P.SfsynipksG.FSFpnnqQFQS...GMNIPP............AVAQETGnV.............SLSSTS
  100-  160 (113.02/58.07)	SHSGS..LP.A.PTS.....SSS.....TMNL.......SSAPNM.........GTTTSWV.P.T........G.PSF....NLTS...GMPGTP............GTPGPPG.I.............AHPVQI
  161-  235 (53.18/22.96)	SFNPT..APsA.PID.....SSSvalrpSMQI.........AP............VASSAVqPqV........GaPYL....SL.S...SM.GAPpqgvwlqspqigGFPRPPF.L.............PYPAAF
  243-  302 (70.92/33.37)	AHVMP..LP.SvPLP.....DSQ.....PPGV.......IPVGNT.........AAISS...P.S........A.ASG....HQLA...GSSGIQ............IELPHPG.I.............DNRKQF
  315-  361 (43.34/17.19)	EQ.....LD.A.WTA.....HKT.....ETGV.......VYYYNA.........LTGESTY.D.K........P.PGF....KEEPdkvSMQPTP........................................
  363-  419 (38.82/14.54)	......................S.....TVNL.......SGTDWV.........LVTTS.....D........G.KKF.....YHN...GKTKVS............SWQIPNE.VielrkkqdadvpkEHPVSI
  453-  499 (26.90/ 7.55)	........S.A.VQG.....TSS.....ALDLikkklqdSGAP............VTSSPV.P.A........P.SES....NGSR...GVESTP...........kG...........................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.04|      15|      15|     743|     757|       2
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  648-  662 (23.71/13.22)	HLLNERVLPLK.RAAE
  743-  757 (24.66/14.04)	EKLRERERELR.KRKE
  760-  774 (19.67/ 9.78)	EQETERVR.LKvRRKE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     289.54|      52|      66|     596|     647|       3
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  512-  579 (24.09/10.14)	...............................................INGDGNLSDSSSdsEDA.DSgptKeeciT...QFKEMLKergvapfskwekelpKIVFDPRFKA....IPSHSaRR
  596-  647 (88.74/60.31)	EK.RAAQKA.....................................AIEGFKQLLDEAS..EDI.DH...K....T...DYQSFRK...............KWANDPRFEA....LDRKD.RE
  663-  714 (72.48/47.69)	EKaQAVRAA.....................................AATSFKSMLQE.K..GDI.TV...S....S...RWSRVKD...............SLRNDPRYKS....LRHED.RE
  732-  820 (45.55/26.79)	ER.EA..KAkrdeqeklrererelrkrkereeqetervrlkvrrkeAVATFQALLVETI..K...DP...Q....A...SWTGSKP...............KLEKDPQRRAanpdLEPSD.ME
  837-  887 (58.67/36.98)	EF.RALLAE.....................................VLTA.....EAAS..QETeDG...K....TvlnSWSTAKR...............LLKPDPRYNK....MARKE.RE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14475 with Med35 domain of Kingdom Viridiplantae
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