<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14474

Description Uncharacterized protein
SequenceMASPAWLPQEVKPSVSQSPVSVSPAGGASTQTSASLASSVGLHTSNSSGGSTTDSIQEPLQAKFSNAPSFAVPASSFSYGVPPNANISFGASQQSSPGSAIQSNPPASPRVQPPVPGLSSSASPSFSYNIPKSGFSFPNNQQFQSGMNIPPAVAQETGNVSLSSTSSHSGSLPAPTSSSSTMNLSSAPNMGTTTSWVPTGPSFNLTSGMPGTPGTPGPPGIAHPVQISFNPTAPSAPIDSSSVALRPSMQIAPVASSAVQPQVGAPYLSLSSMGAPPQGVWLQSPQIGGFPRPPFLPYPAAFPGPFPLPAHVMPLPSVPLPDSQPPGVIPVGNTAAISSPSAASGHQLAGSSGIQIELPHPGIDNRKQFHDAGNENRASVNEQLDAWTAHKTETGVVYYYNALTGESTYDKPPGFKEEPDKVSMQPTPVSTVNLSGTDWVLVTTSDGKKFYHNGKTKVSSWQIPNEVIELRKKQDADVPKEHPVSIPINNVMTEKGSAPISLTAPAINTGGREAMAFKPSAVQGTSSALDLIKKKLQDSGAPVTSSPVPAPSESNGSRGVESTPKGQQSDNSKDKLKDINGDGNLSDSSSDSEDADSGPTKEECITQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHKTDYQSFRKKWANDPRFEALDRKDREHLLNERVLPLKRAAEEKAQAVRAAAATSFKSMLQEKGDITVSSRWSREKLRERERELRKRKEREEQETERVRLKVRRKEAVATFQALLVETIKDPQASWTGSKPKLEKDPQRRAANPDLEPSDMEKLFREHIKRLNERCAHEFRALLAEVLTAEAASQETEDGKTVLNSWSTAKRLLKPDPRYNKMARKEREVLWRRFSEEMLRKQKSALDHKEDRKTDAKSRSSVDSGRVPFGSRGTHDRR
Length956
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.696
Instability index60.08
Isoelectric point9.16
Molecular weight103432.37
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14474
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     452.54|      61|      61|     167|     227|       1
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   13-   62 (45.63/17.06)	....................P..............SVSQS.....PVS.....VS..PAGGASTQ.....TS.ASLASSVGL..HTSN............SS......GGstT.DS.I.QEPLQA
   65-  117 (54.96/22.26)	SNAP...........SFA.VP..............ASSFS......YG..................V.P....PNANISFGAsqQSSP............GSaiqsnpPA..S.PR.V.QPPVPG
  123-  166 (48.52/18.67)	SPSF...........SYN.IP..............KSGFS.....F......................P.NN.QQFQ..SGM..NIPP............AV......AQ..E.TGnV.SLSSTS
  167-  227 (112.53/54.34)	SHSG...........SLP.AP..............TSSSS.....TMN.....LSSAPNMGTTTSWV.P.TG.PSFNLTSGM..PGTP............GT......PG..P.PG.I.AHPVQI
  228-  301 (43.80/16.04)	SFNP...........TAPsAP..............IDSSSvalrpSMQ.....I..AP...VASSAVqPqVGaPYLSL.SSM...GAPpqgvwlqspqigGF......PR..P.PF.L.PYPAA.
  342-  422 (45.94/17.23)	AASGhqlagssgiqiELP.HPgidnrkqfhdagneNRASV.....NEQ.....LDAWTAHKTETGVV......YYYN...AL..TGES............TY......DK..P.PG.FkEEPDKV
  429-  472 (55.13/22.35)	V......................................S.....TVN.....LSGTDWVLVTTS.....DG.KKF.YHNGK..TKVS............SW......QI..P.NE.V.IE.LRK
  473-  537 (46.03/17.28)	KQDA...........DVP.KE..............HPVSI.....PINnvmteKGSAP.ISLTAPAI.N.TG.GREAMAFKP..SAVQ............GT......SS..AlDL.I.KKKLQ.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.31|      14|      15|     561|     574|       2
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  561-  574 (23.81/10.16)	ESTPKGQQSDNSKD
  578-  591 (22.50/ 9.19)	DINGDGNLSDSSSD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.17|      12|      15|     303|     314|       3
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  303-  314 (26.27/13.15)	PGPFPLPAHVMP
  319-  330 (24.90/12.03)	PLPDSQPPGVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     387.67|      65|      66|     662|     726|       4
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  605-  657 (68.68/34.90)	...........ITQFKEMLKE..RGV.APFS...KWEKELPKIVFDPRFKA....IPSHSARRS...LFEHY.VKTRA
  662-  726 (106.58/58.02)	KEK.RAAQKAAIEGFKQLLDEASEDI.DHKT...DYQSFRKKWANDPRFEA....LDRKDREHL...LNERV.LPLKR
  729-  791 (80.79/42.29)	EEKaQAVRAAAATSFKSMLQE.KGDI.TVSS...RWS..REKLRERER.EL....RKRKEREEQ...ETERVrLKVRR
  792-  848 (68.95/35.06)	KE........AVATFQALLVET...IkDPQA...SWTGSKPKLEKDPQRRAanpdLEPSDMEKL...FREHI....KR
  855-  918 (62.66/31.23)	HEF.RALLAEVLTA.....EAASQETeDGKTvlnSWSTAKRLLKPDPRYNK....MARKEREVLwrrFSEEM.LR...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14474 with Med35 domain of Kingdom Viridiplantae
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