<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14473

Description Uncharacterized protein
SequenceMHPASRFLHLHSLTVCLPMQTSVLEPLSSHHLAIQSNPPASPRVQPPVPGLSSSASPSFSYNIPKSGFSFPNNQQFQSGMNIPPAVAQETGNVSLSSTSSHSGSLPAPTSSSSTMNLSSAPNMGTTTSWVPTGPSFNLTSGMPGTPGTPGPPGIAHPVQISFNPTAPSAPIDSSSVALRPSMQIAPVASSAVQPQVGAPYLSLSSMGAPPQGVWLQSPQIGGFPRPPFLPYPAAFPGPFPLPAHVMPLPSVPLPDSQPPGVIPVGNTAAISSPSAASGHQLAGSSGIQIELPHPGIGNENRASVNEQLDAWTAHKTETGVVYYYNALTGESTYDKPPGFKEEPDKVSMQPTPVSTVNLSGTDWVLVTTSDGKKFYHNGKTKVSSWQIPNEVIELRKKQDADVPKEHPVSIPINNVMTEKGSAPISLTAPAINTGGREAMAFKPSAVQGTSSALDLIKKKLQDSGAPVTSSPVPAPSESNGSRGVESTPKGQQSDNSKDKLKDINGDGNLSDSSSDSEDADSGPTKEECITQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHKTDYQSFRKKWANDPRFEALDRKDREHLLNERVLPLKRAAEEKAQAVRAAAATSFKSMLQEKGDITVSSRWSRVKDSLRNDPRYKSLRHEDREILFNQYISDLKAVEEEAEREAKAKRDEQEKLRERERELRKRKEREEQETERVRLKVRRKEAVATFQALLVETIKDPQASWTGSKPKLEKDPQRRAANPDLEPSDMEKLFREHIKRLNERCAHEFRALLAEVLTAEAASQETEDGKTVLNSWSTAKRLLKPDPRYNKMARKEREVLWRRFSEEMLRKQKSALDHKEDRKTDAKSRSSVDSGRVPFGSRGTHDRR
Length928
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.744
Instability index57.29
Isoelectric point9.07
Molecular weight102014.35
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14473
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     394.44|      61|      61|     100|     160|       1
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   11-   84 (29.19/ 8.38)	...................................HS.LTvcLP.MQTSvleplSSH.....HLAI.......QSNPPAsprvqppvpGL.SSSAS.P.SfsynipksG.FSFpnnqQFQ.....S...G..MNIPP
   85-  146 (96.38/45.04)	A..VAQE.TGnV.............SLSSTS...SHS.GS..LP.APTS.....SSS.....TMNL.......SSAPNM.........GT.TTSWV.P.T........G.PSF....NLT.....S...G..MPGTP
  147-  209 (65.78/28.34)	G..TPGP.PG.I.............AHPVQI...SFN.PT..APsAPID.....SSSvalrpSMQI.........AP............V.ASSAVqPqV........GaPYL....SL......S...S..M.GAP
  222-  285 (58.04/24.12)	G..FPRP.PF.L.............PYPAAF......pGP..FP.LP........AH.....VMPL.......PSVPLP.........DSqPPGVI.P.V........G.NTA....AISspsaaS...GhqLAGSS
  286-  352 (56.85/23.47)	GiqIELPhPG.I.............GNENRAsvnEQ......LD.AWTA.....HKT.....ETGV.......VYYYNA.........LT.GESTY.D.K........P.PGF....KEE.....PdkvS..MQPTP
  384-  440 (38.41/13.41)	S..WQIP.NE.VielrkkqdadvpkEHPVSI.....................piNNV.....MTEK.......GSAP.I.........SL.TA.................PAI....N.T.....G...G..REAMA
  441-  488 (49.79/19.62)	F..KP......................................S.AVQG.....TSS.....ALDLikkklqdSGAP............V.TSSPV.P.A........P.SES....NGS.....R...G..VESTP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.35|      15|      15|     734|     748|       2
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  639-  653 (23.34/14.62)	HLLNERVLPLK.RAAE
  734-  748 (25.28/16.48)	EKLRERERELR.KRKE
  751-  765 (19.72/11.16)	EQETERVR.LKvRRKE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     328.22|      52|      66|     587|     638|       3
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  529-  570 (35.65/14.71)	...............................................ITQFKEMLKE.........R...GVAPF.SKWEKelpkivfDPRFKA....IPSHSaRR
  587-  638 (87.41/46.12)	EK.RAAQKA.....................................AIEGFKQLLDEASEDI.DHKT...DYQSFRKKWAN.......DPRFEA....LDRKD.RE
  654-  705 (73.94/37.95)	EKaQAVRAA.....................................AATSFKSMLQE.KGDI.TVSS...RWSRVKDSLRN.......DPRYKS....LRHED.RE
  723-  811 (46.14/21.08)	ER.EA..KAkrdeqeklrererelrkrkereeqetervrlkvrrkeAVATFQALLVETIK...DPQA...SWTGSKPKLEK.......DPQRRAanpdLEPSD.ME
  828-  878 (58.30/28.46)	EF.RALLAE.....................................VLTA.....EAASQETeDGKTvlnSWSTAKRLLKP.......DPRYNK....MARKE.RE
  881-  908 (26.78/ 9.33)	WR.RFSEE......................................MLRKQKSALDH.KE...DRKT...DAKS................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14473 with Med35 domain of Kingdom Viridiplantae
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