<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14471

Description Uncharacterized protein
SequenceMDQNQRSSSSSASASRAYQFHPARAAIVNLFDLYLGRSSRQKPEDSVREPPNKSQKRVVALNRELPPRNEQFLLDFEQLQSQFPDQEQLRVVTESVLISLVVQCSNHAPRAEFLLFALRSLCTIGHINWDSFLPSLFSSVSTAEMSVGQGSQAMPAVSSQSVHGIGSPSQSAIEPSSCVTMSPVKSSDMPCNGQQATARVNSSIRDNAISSLRQLCCKIILTGLEFNLRPVTHADIFSHMLNWLVNWDQKQLGVDESDGVKSWRPGKALIEWLHSCLDVIWLLVDEDKCRVPFYELLRSGLQFMENIPDDEALFTLILEIHRRRDMMAMHMKMLDQHLHCPTFGTHRIFSQTTPSVSGEAVASLRYSPITYPSVLGEPLHGEDLATSIPKGSLDWERALRCIRHALCTTPSPDWWKRVLLVAPCYRSPSQGPTPGAVFTSEMICEGTIDRIVELLKLTNSDINCWQEWLVFSDIFFFLIKSGCVDFVDFVDKLVSRLTEGDQHILRTNHVTWLLAQIIRVELVMSALNADARKVETTRKILSFHKEDRSSDPNSPQSILLDFISSCQNLRIWSLNTTTREYLNNEQLQKGKQIDEWWRQASKGDRMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSAAGVAESLPGTNLQSNERLMVMREVSPLPMSLLSGFSINLCLKLAYQMEESLFSGQVVPSIAMAETYTRLLLIAPHSLFRSHFSHLAQRNPSVLSKPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISALKSKRGDHRVFRLAENLCMNLILSLRDFFFVKREGKGPTEFTETLNRITVVTLAIIIKTRGIADADHLLYLQTMLEQILATSEHTWSDETLRFFPPLLRDFLIPRIDKRGVAIQAWQQAETTVINQCTQLLSPSADPTYAMTYLSHSFPQHRKYLCAGAWILMQGHPENINSVNLARVLREFSPEEVTHNIYTMVDVLLHHIQLELQHGHSLQDLLLKACANLAFYIWTHELLPLDILLLALIDRDDDPHALRIVMSLLDRQELQQRVKLYCMNRGPPEHWIYTGVFKRVELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDAKDSAERVLAMYSQFLAYHPLRFTFVRDILAYFYGHLPVKLIVRILNGLDINKIPFSESFPSHVNSSNSAMCPPPDYFATLLLGLVNNVIPPLHNNSKSGSVSDALNNSMRAPPNKTPATSQSGQTNVSDGQKAFYQIQDPGTYTQLVLETAVIELLSLPVSASQIVSSLVQIVINIQPTLIQSSNGLHGAPNGVGQGSVLPTSPSGGSTDSLGTSRSTASVSGINASNFVSRSGYTCQQLSCLLIQACGLLLAQLPSDFHVQLYIEASRIIKETWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHLIIKHLRPVTSVAMLRIAFRIMSPLLPKLANAHTLFSKTLSLILSMMVDVFGKNTQPPTPVEPLEIADLIDFFHHIIHYEGQGGPVQANSKPRPEVLALCGRAAESLRPDIQHLLFHLKPDTNSSIYAATHPKLVQNAS
Length1579
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.08
Grand average of hydropathy-0.062
Instability index48.81
Isoelectric point6.56
Molecular weight177259.82
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14471
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.32|      35|     325|    1032|    1076|       1
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  924-  986 (46.07/21.84)	QHR.KYLCagawiLMQGHPEninsvnlarvlrefspeevtHNIYTMVdvlLHHIQLELQHGHSL
 1039- 1074 (64.25/49.95)	QQRvKLYC.....MNRGPPE....................HWIYTGV...FKRVELQKALGNHL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.39|      82|      91|    1194|    1284|       3
---------------------------------------------------------------------------
 1197- 1282 (126.75/86.84)	PPLHNNSKS..GSVSDALNNSM..RAPP.NKTPATSQSGQT.NVSdGQKAFYQIQDPGtYTQLVLETAVIELLSLPVsaSQIVSSL.VQIVIN
 1285- 1373 (117.64/58.85)	PTLIQSSNGlhGAPNGVGQGSVlpTSPSgGSTDSLGTSRSTaSVS.GINASNFVSRSG.YTCQQLSCLLIQACGLLL..AQLPSDFhVQLYIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      15|      95|     164|     178|       4
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  148-  162 (26.09/16.75)	GQGSQAMPAVSSQSV
  164-  178 (27.54/18.16)	GIGSPSQSAIEPSSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.06|      30|     111|     679|     710|       6
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  679-  710 (44.12/39.31)	NLCLKLAYQMEESLF...SGQvVPSiAMAETYTRL
  790-  822 (48.94/33.28)	NLCMNLILSLRDFFFvkrEGK.GPT.EFTETLNRI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     324.63|     101|    1124|     277|     384|      11
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  277-  384 (164.81/122.57)	LDVIWLLVDEDKCRV.PFYELLRSglqFMENIPDDEALFTLILEIHRR....RDMMAMHMKMLDQHLhcPTF.GTHRIFSQTTPSVSGEAVASlrYSPITYPSVLGEPLHGEDL
 1403- 1509 (159.82/99.45)	LDPTWAAQDNTSTAIgNIVALLHS...FFSNLPQEWLEGTHLIIKHLRpvtsVAMLRIAFRIMSPLL..PKLaNAHTLFSKTLSLILSMMVDV..FGKNTQPPTPVEPLEIADL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14471 with Med23 domain of Kingdom Viridiplantae
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