<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14456

Description Uncharacterized protein
SequenceMQRYHATGCTSAVNNNAIGGTSGRDSVRADSAALPANLSLASRRASQLNPYKLKCEKDPLNGRLGPPDFHPQTPNCPEETLTREYVQFGYRETVEGIEESREISLSQAQVFNKPLVFRCKEAGQVYGAPLADTLLSKPGVFPEQRHCGEDLRKKWIEGLSQQHKRLRSLADHVPHGYRKRPLFEVLTRNNVPLLRATWFIKVTYLNQVRPGSAIISSGAPDKAQLSRTELWTKDVIDYLQYLLDELFSRNNSHSTSHNRDRSPQTLYAGSVPQRSDPASAVPDGEEPSLHFKWWYVVRLLQWHHAEGLLLPTLIIEWVLSQLQEKELLEIMQLLLPIVYGVLETVVLSQTYVRNLVGVAVRFIREPSQGGSDVVGNSRRAYTVSTVVEMLRYLILAVPDTFVALDCFPLPSCVVSYIVNDGLPKMSEDVRKIGNGPAEVASAFRSKGFDAQYQSLAFDHVVSSIQKRADNLAKAASPSYPFHSIAKAVQALDRSLVQGDVRGAYRFLFEDPCDGVANESWITGVSPCLRTSLKWIGTANLSFVCSVFFLCEWATCDFRDFRTAPPCELKFTGRKDFSQVHVVIQLLKLKIRDLQCSPQRKNDSFLGVGSVAKGSTQHNNFPVRISMGNSYETKNRSKNGDQRSIKSSNIFESPGPLHDIIVCWIDQHEAGKGEGFKRLQLLVIELIRSGIFHPHAYVRQLIVSGIMDTDGPVVEVDRRKRHYQILKLLPGLLMRHALKEAGIAEEPQLSEAMNLYSTERRLILRGLLSDQNKNANMIVSALKQKHFPVPGKDGPLPVSVDQWKAVQSSSNILSVKGGKSDADLEELKEAISVLLQLPNSSSPSTETGLDESQGSVKRPFGSIYNKMDLGEGTPGCEECKRAKRQKVSDERSSYIQGNSPIPSDDEDTWWMRKRLKSLEPMKVDPPVKSTKQVSRIRQKIVRKTQSLAQLAAARIEGSQGASTSHVCNNKVSCPHHRTGLEGETPKSTDPTKVSHGGDIVSIGKALKRLRFMEKRTITVWLMTVIRQLVEETEKTIAKVGQFGRTFTSVDDRSSIRWKLGEDELSAALYLMDVSNDLVLAVKFLLWLLPKVSSPSSTFHSGRNILLLPKNVESQVCEVGEAFLISSLRRYENIVIATDLIPEVLSAIMHRASAIVASNGRLSGSPALAYSRYLSKRNSNVASVIEWEKNFKATCDKRLLSELESGQSVDGELGFPLGVPAGVEDLDDFFRQKISGVRLSRAGLNMREIVQRNVNVEDALHYFYGKERKLFAAGAHKGPPVEKWDDGYQIAQNVITELMDCIRQTGGAAQEGDPSLVSSAVSAIVGNVGPIIAKVSDFRAGGSYSSFPAATDSLNCARRILRIHISCLCLLKEALGERQTRVFEVALATEACSALAGVFSPGKASRNQYQSSPESHDSNTNASNDILNSSTKIGLGRTTKVAAAVSALIIGAVAQGVTSLERLVTVFKLKERLDIIQFVRSSRSNSNGNARSSGAFKGDISLEVYVHWFRLLVGNCRTVSDGLVVELLGEPTVIALSRMQRMLPLGLVFPPAYSIFAFVVWRPFLLNTSIAAREDFNQLYQSLTTAIGDAVKHSPFRDVCLRDSQGFYDLVAADGSDAEFAAILELNGSDMLLKSTAFVPLRARLFLNAIMDCKMPVSLFMQCEGNQVSGHGESKVQYAERETKLVDKLVHILDTLQPAKFHWQWVELRLLLNEQALIEKLETQDMSLVDAIRSSSPSPEKAAASENEKYFIEIILTRLLVRPDAAPLFSDVVHLFGRSLADSMLLQVKWFLGGSDVLFGRKTIRQRLLNIAETKGLSTKTQFWKPWGWCSYGFDPVTNKGDKKKFEVTSLEEGEMVEEGIDSKKYGKGLTPTYDIESYNVTQQRVTERALIELLLPCIDQSSDDSRNTFANDLIKQLSNIEVQISAVTRGTNKQAGPAPSGVEGPTSKGNNRKGIRGGSPGLARRAAVAADSAPPSPAALRASMSLRLQLLLRLLPIICADREPSGRNMRQGLASVVLRLLGNRVVNEDAELCVNLLQSSFSKREAESSTEAASASFADLSSESLFDQLLLVLHGLLSSCQPSWLRPTKSTNESGKDFAAFDREMADHLQSDLDRMQLPERIRWRIQTAMPVVVPSIRCFVSCQPPPVPNTALAVLQTSISTPGFYSGISNPPQRNQVPLARTVANIPGKSKSLPSQDYDMDIDPWTLLEDGAGSGPSSSNSALIGSADHGNLRASSWLKGAVRVRRKDLTYIGAVDDDS
Length2259
PositionKinase
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.241
Instability index48.15
Isoelectric point8.72
Molecular weight249346.58
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14456
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     249.03|      86|     726|     354|     446|       1
---------------------------------------------------------------------------
  354-  446 (128.74/109.32)	NLVgVAVRF.......IREPS...QGGSDVVGNSRRAYtvSTVVEMLR.YLILAV...PDTFVALDCFPlpsCVVSYIVNDGLPKMSEDVRKIGNgPAEVASAFRSK
 1075- 1174 (120.29/79.48)	DLV.LAVKFllwllpkVSSPSstfHSGRNILLLPKNVE..SQVCEVGEaFLISSLrryENIVIATDLIP...EVLSAIMHRASAIVASNGRLSGS.PALAYSRYLSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      13|     728|     841|     853|       3
---------------------------------------------------------------------------
  841-  853 (23.74/12.85)	SPSTETGLDESQG
 1592- 1604 (25.68/14.52)	SPFRDVCLRDSQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     204.63|      68|      70|    1288|    1357|      10
---------------------------------------------------------------------------
 1270- 1310 (46.84/37.62)	...........................AAG.AH.KGPP..VEKWDDGYQIAQNVITELmdC.IRQTGGAAQEG
 1311- 1379 (109.69/82.93)	DPSLVSSAVSAIVGNVGPIIAKVSDFRAGG.SY.SSFPAATDSLNCARRILRIHISCL..ClLKEALGERQTR
 1382- 1426 (48.10/30.37)	EVALATEACSALAGVFSPGKASRNQYQSSPeSHdSNTNASNDILN............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.90|      31|     245|     631|     663|      11
---------------------------------------------------------------------------
  631-  663 (54.23/36.21)	ETK..NRSKNGDQRSikSSNIFESPGPLHDIIVCW
  877-  909 (55.67/31.60)	ECKraKRQKVSDERS..SYIQGNSPIPSDDEDTWW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.31|      17|      22|    1768|    1786|      12
---------------------------------------------------------------------------
 1768- 1786 (25.05/23.94)	SDVvhLFGRSLADSMLLQV
 1793- 1809 (30.26/20.52)	SDV..LFGRKTIRQRLLNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14456 with Med12 domain of Kingdom Viridiplantae
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