<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14442

Description Uncharacterized protein
SequenceMHRRESHMSRTELGQGSNSAQTPFKVSLLEHVKALDNFSSPNVLSSNFLFSLPTQKPHAQEATAMSSMACRIQNIGRLPSAQVQKAWHALSNLQISHRNYTKPGKTVLVKDASSRYCRDVGRTATPSSCDIDKSHTHMQTHQYINGTNSRNSEAATCLGNRFPSSNVNVADVGNFFGGQSQVRASMVNNFDSRVPGGSFSNNSVHTSQIKHSAKVLVNDIDDDDEILENIDVDQIVEQYQSNCTPQPLISKLPPITPSIDKDSIARQEVTSLPPDLCSNCIHGLKIGLCPEAASHLQEMKDTLITISNELLDDVNDLSPTRIEKLRQDRLQLNKKIQQLERHLCNNSLDEERRKSHFSASTATPRPFQYETPQAAAFRTDTMIFDSQVQSHNVPGDYERCNSSSVSFSSVDGFGFSSCPVEREPYIPKFVEVNYIEGSNDNKWSSNNFPWTKKLEANNKKVFGNHSFRLNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEIFRELNSEYCKYKLLYVTPEKVAKSDVLLRQLENLNARQLLARIVIDEAHCVSQWGHDFRPDYQALGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCLDDIDKFIKENHHDESGIIYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPLASGYNRTNTANSGRVLETNTENLLRMVSYCENDVDCRRILQLIHLGEKFDCTTCKKTCDNCLKIKSFVEKDVTGIAKQLVELVKLTGQQFSSSHILEVYRGSFSQFVKKHRHQTVSLHGVGKHLAKGEASRVLRHLVTEDLLSEEVKKSDVYGSVSSILKVNELKACELFSGRKTILIRFPSSVKASKQKNSEVISAKGSLTSGKQSPPHIGTEQPQSKANLDLSTKIFTSLKMLRTNLVRESDDGVMAYHIFANTTLQNMSSRIPRTKEELLEINGIGKGKLAKYGDRILETIEAAIKEYYKTDKNSTSSNDSNDMKRKRDGNNNGNENFDDNDFTKSTDRSKKKAPKRQNKTIEAYSYAEPDYPQLIDDELDLYCYDFEVNASDMKTNQNAGGRVLPQWSTPGNGRQ
Length1221
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.536
Instability index46.70
Isoelectric point8.35
Molecular weight137082.25
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14442
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     301.02|      77|     655|     117|     193|       1
---------------------------------------------------------------------------
  117-  193 (134.82/83.45)	CRDVGRTATPSSCDIDKSHTHMQT..HQ..YINGTN..SR....NSEAATCLG.NRFPSSNVNVADVGNFFG...GQSQVRASMV....NNFDSR
  695-  766 (79.92/46.38)	..........SRMDCEKVAERLQEcgHKaaFYHGSM..DP....AQRA..FVQ.KQWSKDEINIICATVAFGmgiNKPDVRFVIH....HSLPKS
  774-  849 (86.27/50.67)	CGRAGRDGQRSSCVLYYSYS.......D..YIRVKHmiSQgvieQSPLAS..GyNR.....TNTANSGRVLE...TNTENLLRMVsyceNDVDCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.07|      37|     772|     292|     330|       2
---------------------------------------------------------------------------
  292-  330 (51.38/46.15)	AASHLQEMKDTLITISNELLdDVNDLSPTRIEKLrQDRL
 1066- 1102 (61.69/44.14)	ANTTLQNMSSRIPRTKEELL.EINGIGKGKLAKY.GDRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.83|      33|     654|     354|     386|       4
---------------------------------------------------------------------------
  354-  386 (59.07/34.12)	KSHFSASTATPRPFQYETPQA.AAFRTDTMIFDS
 1010- 1043 (52.76/29.74)	KGSLTSGKQSPPHIGTEQPQSkANLDLSTKIFTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14442 with Med34 domain of Kingdom Viridiplantae
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