<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14440

Description Uncharacterized protein
SequenceMHRRESHMRQDRTELGQGSNSAQTPFKVSLLEHVKALDNFSSPNVLSSNFLFSLPTQKPHAQEATAMSSMACRIQNIGRLPSAQVQKAWHALSNLQISHRNYTKPGKTVLVKDASSRYCRDVGRTATPSSCDIDKSHTHMQTHQYINGTNSRNSEAATCLGNRFPSSNVNVADVGNFFGGQSQVRASMVNNFDSRVPGGSFSNNSVHTSQIKHSAKVLVNDIDDDDEILENIDVDQIVEQYQSNCTPQPLISKLPPITPSIDKDSIARQEVTSLPPDLCSNCIHGLKIGLCPEAASHLQEMKDTLITISNELLDDVNDLSPTRIEKLRQDRLQLNKKIQQLERHLCNNSLDEERRKSHFSASTATPRPFQYETPQAAAFRTDTMIFDSQVQSHNVPGDYERCNSSSVSFSSVDGFGFSSCPVEREPYIPKFVEVNYIEGSNDNKWSSNNFPWTKKLEANNKKVFGNHSFRLNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEIFRELNSEYCKYKLLYVTPEKVAKSDVLLRQLENLNARQLLARIVIDEAHCVSQWGHDFRPDYQALGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCLDDIDKFIKENHHDESGIIYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPLASGYNRTNTANSGRVLETNTENLLRMVSYCENDVDCRRILQLIHLGEKFDCTTCKKTCDNCLKIKSFVEKDVTGIAKQLVELVKLTGQQFSSSHILEVYRGSFSQFVKKHRHQTVSLHGVGKHLAKGEASRVLRHLVTEDLLSEEVKKSDVYGSVSSILKVNELKACELFSGRKTILIRFPSSVKASKQKNSEVISAKGSLTSGKQSPPHIGTEQPQSKANLDLSTKIFTSLKMLRTNLVRESDDGVMAYHIFANTTLQNMSSRIPRTKEELLEINGIGKGKLAKYGDRILETIEAAIKEYYKTDKNSTSSNDSNDMKRKRDGNNNGNENFDDNDFTKSTDRSKKKAPKRQNKTIEAYSYAEPDYPQLIDDELDLYCYDFEVNASDMKTNQNAGGRVLPQWSTPGNGRQ
Length1223
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.544
Instability index46.31
Isoelectric point8.35
Molecular weight137394.57
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14440
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.83|      45|     125|       5|      57|       1
---------------------------------------------------------------------------
    5-   57 (68.41/64.92)	ESHMRQDRTELGQGSNSAQTpfkvsllEHVKALDN.FSSPNVLSS...NFlFSLPTQ
  135-  183 (73.41/49.02)	KSHTHMQTHQYINGTNSRNS.......EAATCLGNrFPSSNVNVAdvgNF.FGGQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.30|      22|     128|     793|     817|       2
---------------------------------------------------------------------------
  793-  817 (31.27/28.09)	SYSDYIRvKH...MIS.QGVIEQspLASG
  916-  941 (31.03/16.67)	SFSQFVK.KHrhqTVSlHGVGKH..LAKG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14440 with Med34 domain of Kingdom Viridiplantae
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