<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14431

Description ATP-dependent DNA helicase
SequenceMETEEILAEELLNVEVEIQGVQDQIKILLDQQERLYERQSELKAILEACKESGYPVNGASTTVEDWSGPFEWDSQADDTRFNIFGISAYRANQREIINAVMSGKDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQDQVMGLAALGIPAHMLTSTTSKEEEKLIYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPVIALTATATQKVQSDLMEMLHIPRCVKFVSTVNRPNLFYMVREKSSVGKVVVDEIAEFIRDSCSHNDSGIVYCFSRKECEQVAKELRERGISALHYHADMDVNARENVHMRWSNGKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSQCLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSSFFRHFAEPLQDCNGMCDNCAFSNEVKEVDASRMFF
Length490
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.08
Grand average of hydropathy-0.263
Instability index45.94
Isoelectric point6.05
Molecular weight55335.72
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14431
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.36|      68|     250|      85|     158|       1
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   85-  158 (104.50/88.73)	GISA..YRA....NQREIINAVMSGKDVLVIMAagggkSLCYQLpAILRDGVALVVSPLLSLIQD...QVMGLAAL.GIPAHML
  336-  413 (102.86/70.32)	GISAlhYHAdmdvNARENVHMRWSNGKLQVIVG.....TVAFGM.GINKPDVRFVIHHSLSKSMEtyyQESGRAGRdGLPSQCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.62|      61|     154|       9|      73|       2
---------------------------------------------------------------------------
    9-   73 (86.79/83.15)	EELLNVEVEiQGVQDqIKILLDQQERLyERQSELKAILEACKESG....YPVNGASTtVEDWSGPFEWD
  167-  231 (103.84/76.44)	EKLIYKALE.KGEGD.LKILYVTPEKI.SKSKRFMSKLEKCHHAGrlslISIDEAHC.CSQWGHDFRPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.06|      22|     123|     304|     325|       3
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  304-  325 (44.21/29.53)	FIRDSCSHNDSGIV.YCFSRKEC
  429-  451 (38.84/25.09)	FYENSGLQNLYDIVrYCQSKRQC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14431 with Med34 domain of Kingdom Viridiplantae
Unable to open file!