<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14423

Description Uncharacterized protein
SequenceMDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQGQSLSVPLPANQPQPHQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQSQNSQQYMYHQQLQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPAVVQSSLSSLQLNQQSAIQQSTPSMLQQHPQSVLRQPQQQRASVVHQQQTSQQPIFPPQQQQQQQLMVQQSNATSLSQNQLIRQQNNVGDMQQQQQQQRLLSQQNNILNLQQQQQQFMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQTKVQGQQQQHQSSSNLLPTQRQQSQPTQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQSVMDQQKQLYQSQRPLPETSSKWT
Length542
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-1.026
Instability index87.74
Isoelectric point10.21
Molecular weight60964.21
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14423
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     305.44|      39|      39|     217|     255|       1
---------------------------------------------------------------------------
  190-  229 (48.40/ 6.95)	MQN....M.GQGVPSNMFATS..QRQL.........PgrqQ......VvPQQQQQQQQ...........SQNS
  230-  269 (64.23/12.39)	QQY....MYHQQLQHPLLKPKYQQGNI.........P...Q......LvQQQQQQPNL...........LQPT
  309-  367 (48.53/ 6.99)	TPS....MLQQHPQSVLRQPQQQRASVvhqqqtsqqP...I......F.PPQQQQQQQlmvqqsnatslSQNQ
  371-  409 (52.37/ 8.31)	QQNnvgdMQQQQQQQRLLS...QQNNI.........L...N......L..QQQQQQFM...........AQQS
  410-  439 (45.72/ 6.03)	NLS....NMHQ....PQLGP...QSNV.........T...G......L...QQQQHLG...........TQSG
  440-  485 (46.19/ 6.19)	NSS....MQTNQHSVHLLQQTKVQGQQ.........Q...QhqsssnLlPTQRQQSQP...........TQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.00|      15|      15|     120|     134|       2
---------------------------------------------------------------------------
  101-  115 (23.79/ 7.23)	ESNSAGNSNRPPDPG
  144-  158 (23.21/ 6.86)	QLLSQNIQNNIPAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.98|      18|      21|     496|     513|       3
---------------------------------------------------------------------------
  496-  513 (31.68/12.35)	LQR....DMQQRL.QASGQVPGT
  515-  537 (24.30/ 6.82)	LQPqsvmDQQKQLyQSQRPLPET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.27|      17|     129|     159|     177|       5
---------------------------------------------------------------------------
  159-  177 (25.72/15.75)	VQSSagLSS.ALPPSSGLTQ
  290-  307 (25.55/ 9.77)	VQSS..LSSlQLNQQSAIQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      13|      19|      56|      72|       6
---------------------------------------------------------------------------
   56-   72 (15.33/26.24)	LKKIAVrfeeKIYTAAT
   78-   90 (22.09/18.94)	LRKISL....KMLTMET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14423 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSS
2) MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHE
3) NQQSAIQQSTPSMLQQHPQSVLRQPQQQRASVVHQQQTSQQPIFPPQQQQQQQLMVQQ
4) QQQQQQFMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQTKVQGQQQQHQSSSNLLPTQRQQSQPTQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQSVMDQQKQLYQSQRPLPETSSKWT
5) RKISLKMLTMETKSQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQGQSLSVPLPANQPQPHQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQSQNSQQYMYHQQLQH
6) SLSQNQLIRQQNNVGDMQQQQQQQRLLSQQN
242
1
300
398
79
362
274
51
357
542
240
392










Molecular Recognition Features






MoRF SequenceStartStop




NANANA