<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14422

Description Uncharacterized protein
SequenceMDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQGQSLSVPLPANQPQPHQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQSQNSQQYMYHQQLQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPAVVQSSLSSLQLNQQSAIQQSTPSMLQQHPQSVLRQPQQQRASVVHQQQTSQQPIFPPQQQQQQQLMVQQSNATSLSQNQLIRQQNNVGDMQQQQQQQRLLSQQNNILNLQQQQQQFMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQTKVQGQQQQHQSSSNLLPTQRQQSQPTQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQSVMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGGDWQEEVFQKVGCPDLLSIK
Length573
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-0.987
Instability index84.72
Isoelectric point9.74
Molecular weight64150.63
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14422
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     749.21|     154|     161|     177|     336|       1
---------------------------------------------------------------------------
   33-  162 (175.88/33.76)	........IV..NKIMDTLKRHLP...F.SGHEGLQELKKIAVRFEEK...IYTAATSQsDYLRKISLKMLTMETK...........SQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQgqSLSvPLPANQPQPHQQ....LLSQNIQNNI..PA...AGV..QSS
  177-  336 (264.06/62.94)	QTPI..PSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQ...QQQSQNSQ.QYMYHQQLQHPLLKPKyQQGNIPQLVqQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPAVVQS..SLS.SLQLNQQSAIQQSTPSMLQQHPQSVLrqPQQQRASVvhQQQ
  339-  451 (184.55/35.89)	QQPIfpPQQQQQQQLM..VQQ...SNATSLSQNQLIRQQNNVGDMQQQ...QQ...............QQRLLS...QQNNILNL..QQQQQQFMAQQSNLSNMHQP..Q....LGP...QS..NVT.GLQ.QQQHLGTQSGNSSM...........QTNQHSV....H
  455-  544 (124.73/20.79)	QTKV..Q...GQQQQHQS.....SSNLLPT.Q.....RQQSQPTQMQQlglQQQSNPLQ.RDM.QQRLQ........ASGQVPGTM..LQPQSVMDQQKQLYQSQRPLPETSS........T..SLD.S........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.05|      13|     534|      10|      24|       2
---------------------------------------------------------------------------
   10-   24 (20.47/20.92)	QVGEApmDAGDWRSQ
  547-  559 (26.58/17.57)	QTGHA..TGGDWQEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14422 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSS
2) MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHE
3) NQQSAIQQSTPSMLQQHPQSVLRQPQQQRASVVHQQQTSQQPIFPPQQQQQQQLMVQQ
4) QQQQQQFMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQTKVQGQQQQHQSSSNLLPTQRQQSQPTQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQSVMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGGDWQEEV
5) RKISLKMLTMETKSQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQGQSLSVPLPANQPQPHQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQSQNSQQYMYHQQLQH
6) SLSQNQLIRQQNNVGDMQQQQQQQRLLSQQN
242
1
300
398
79
362
274
51
357
560
240
392










Molecular Recognition Features






MoRF SequenceStartStop




NANANA