<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14421

Description Uncharacterized protein
SequenceMDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQGQSLSVPLPANQPQPHQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQSQNSQQYMYHQQLQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPAVVQSSLSSLQLNQQSAIQQSTPSMLQQHPQSVLRQPQQQRASVVHQQQTSQQPIFPPQQQQQQQLMVQQSNATSLSQNQLIRQQNNVGDMQQQQQQQRLLSQQNNILNLQQQQQQFMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQTKVQGQQQQHQSSSNLLPTQRQQSQPTQMQQLGLQQQSNPLQRDMQQRLQASEWT
Length510
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-1.025
Instability index86.83
Isoelectric point10.19
Molecular weight57395.18
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14421
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     638.03|     124|     127|     190|     316|       1
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    7-  134 (132.31/25.84)	.RPP.QVGEAPMDAGDWRSQ...LQP...DSRQRIVnkiMDT...LKRHLPFSG..HEGLQelkkiavrfeekiytaaTSQSDYLRKIS.LKML.........tMEtksqnTMPNSLESNSAGNSNRP.........PDPGSF...GMQ...........PQVP...NQ.......GQSLSVPL
  135-  242 (165.44/35.12)	..PA..........NQPQPHQQLL.......SQN.....IQNN..IPAAGVQSSagLSS.A.................LPPSSGLTQTPiPSIVG..QN...qiMQ.....NMGQGVPSNMFATSQRQLP.GRQQVVPQQQQQ...QQQ...........SQNS...QQY....MYHQQLQHPL
  243-  387 (181.50/43.81)	LKPKyQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPV...MQTSsvIQPAVVQSS..LSSLQ.................LNQQSAIQQST.PSMLQ..QH..pqsVL.....RQPQQQRASVV..HQQQ.T.SQQPIFPPQQQQ...QQQlmvqqsnatslSQNQlirQQNnvgdMQQQQQQQRL
  388-  505 (158.78/33.25)	LS...QQNNILNL..QQQQQQFMAQQSNLSNMHQP.....Q....LGP...QSN..VTGLQ..................QQQHLGTQSG.NSSMQtnQHsvhllQQ.....TKVQG.QQQQHQSSSNLLPtQRQQSQPTQMQQlglQQQ...........SNPL...QRD....M.QQRLQ...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14421 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSS
2) MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHE
3) NQQSAIQQSTPSMLQQHPQSVLRQPQQQRASVVHQQQTSQQPIFPPQQQQQQQLMVQQ
4) QQQQQQFMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQTKVQGQQQQHQSSSNLLPTQRQQSQPTQMQQLGLQQQSNPLQRDMQQRLQASEWT
5) RKISLKMLTMETKSQNTMPNSLESNSAGNSNRPPDPGSFGMQPQVPNQGQSLSVPLPANQPQPHQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQIMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQSQNSQQYMYHQQLQH
6) SLSQNQLIRQQNNVGDMQQQQQQQRLLSQQN
242
1
300
398
79
362
274
51
357
510
240
392










Molecular Recognition Features






MoRF SequenceStartStop




NANANA