<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14420

Description Uncharacterized protein
SequenceMDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETLKRHLPFSSQEGLQELKKIAVRFEEKIYAAATSQSDYLRKISLKMLTMEIKSQNTMANSLQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEGSLLTELVPTFLDQSSEDNIDLKKRSSEDSISPTRHANGVDWQEEVYQEIEVMKEMYLPELSEMYQRFASYLLQHNSLPQPPKSKQLDKLNFFKAMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFININGRRKPVSSLHQGQLPPSRMHSMQLSQSHITRVQSHENQINPQMLLMNLQGSAATLQQNNMARLQQSSMSSLSGTAQQNMMYWLQPSSNMFWLHPSYNLDSGQGNTLNSLQQFALGSAPQTPVSASQQANVNALSSQSGVSILQLF
Length482
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.718
Instability index83.81
Isoelectric point4.80
Molecular weight53922.61
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14420
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.06|      19|      21|      28|      46|       1
---------------------------------------------------------------------------
    4-   22 (24.53/ 9.21)	.DNEKPRPPQGGssEPSMD.T
   28-   46 (41.89/20.75)	DDNESPSEDEDG..EPSMSPS
   52-   70 (40.64/19.92)	EPSMSPSEDEDG..EPSMSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.36|      27|      27|     178|     204|       2
---------------------------------------------------------------------------
  175-  201 (50.80/33.75)	SDE.SFLTELVPIFLDQSSEGNIDRKKE
  202-  229 (44.48/28.67)	SSEgSLLTELVPTFLDQSSEDNIDLKKR
  230-  249 (34.07/20.32)	SSE.DSIS...P...TRHANG.VDWQEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.56|      16|      19|     393|     408|       3
---------------------------------------------------------------------------
  393-  408 (29.34/14.28)	QQNNMARLQQSS.MSSL
  413-  429 (29.18/14.17)	QQNMMYWLQPSSnMFWL
  439-  453 (18.03/ 6.19)	QGNTLNSLQQFA.LGS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.02|      25|      28|     287|     314|       4
---------------------------------------------------------------------------
  268-  296 (37.37/29.82)	MYQRFASyLLQhnsLPQPPKSKQL.DKL........NF
  300-  333 (31.65/15.14)	MLERLIS.VLQ...ISKSSISPGLkDKLvlyekqivNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.40|      13|      21|     355|     367|       5
---------------------------------------------------------------------------
  355-  367 (24.14/13.84)	RMHSMQLSQSHIT
  379-  391 (22.25/12.21)	QMLLMNLQGSAAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.83|      10|      23|     343|     353|       9
---------------------------------------------------------------------------
  343-  353 (15.43/12.41)	VSSlHQGQLPP
  369-  378 (19.41/10.65)	VQS.HENQINP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14420 with Med15 domain of Kingdom Viridiplantae
Unable to open file!