<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14416

Description Uncharacterized protein
SequenceMDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETLKRHLPFSSQEGLQELKKIAVRFEEKIYAAATSQSDYLRKISLKMLTMEIKSQNTMANSLQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEVSFFTELGPIFLHQSSEGNIEHKKKSSEGSLLTELVPTFLDQSSEDNIDLKKRSSEVPTPDSISPTRHANGVDWQEEVYQEHNSLPQPPKSKQLDKLNFFKAMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFININGRRKPVSSLHQGQLPPSRMHSMQLSQSHITRVQSHENQINPQMLLMNLQGSAATLQQNNMARLQQSSMSSLSGTAQQNMMYWLQPSSNMFWLHPSYNLDSGQGNTLNSLQQFALGSAPQTPVSASQQANVNALSSQSGVSILQLF
Length489
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.737
Instability index83.19
Isoelectric point4.91
Molecular weight54380.93
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14416
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.06|      19|      21|      28|      46|       1
---------------------------------------------------------------------------
    4-   22 (24.53/ 9.20)	.DNEKPRPPQGGssEPSMD.T
   28-   46 (41.89/20.74)	DDNESPSEDEDG..EPSMSPS
   52-   70 (40.64/19.91)	EPSMSPSEDEDG..EPSMSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.20|      27|      27|     178|     204|       2
---------------------------------------------------------------------------
  178-  204 (55.30/32.92)	SFLTELVPIFLDQSSEGNIDRKKESSE
  206-  232 (55.39/32.98)	SFFTELGPIFLHQSSEGNIEHKKKSSE
  234-  260 (52.52/30.92)	SLLTELVPTFLDQSSEDNIDLKKRSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.53|      23|      23|     400|     422|       3
---------------------------------------------------------------------------
  400-  422 (40.17/19.40)	QQNNMARLQQSS.MSSLS.....GTAQQN
  424-  448 (20.26/ 6.40)	....MYWLQPSSnMFWLHpsynlDSGQGN
  454-  475 (31.10/13.49)	QQFALGSAPQTP.VSA.S.....QQANVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.52|      10|      28|     350|     360|       4
---------------------------------------------------------------------------
  350-  360 (15.38/11.11)	VSSlHQGQLPP
  376-  385 (18.14/ 8.30)	VQS.HENQINP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.40|      13|      27|     362|     374|       7
---------------------------------------------------------------------------
  362-  374 (24.14/13.58)	RMHSMQLSQSHIT
  386-  398 (22.25/11.99)	QMLLMNLQGSAAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14416 with Med15 domain of Kingdom Viridiplantae
Unable to open file!