<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14413

Description Uncharacterized protein
SequenceMDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRPPDPGSFGMQPQVPNQGQSLSMPLPANQSQARQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQNMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQQQQSQNSQQYMYHQQLQHQQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPSVVQSSLSSLQQNQQSAIQQSTPSMLQQHPQSVLRQPQQQQASVVHQQQTSMPQQPILPPQQQQQQQLMVQQSNATSLSQNQLIGQQNNVGDMQQQQQQQRLLSQQNNILNLQQQQQQQQQQQQQQQQLMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPPQGQQSQPQASQQQLLSQIQSQPPQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNVMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGGDWQEEVFQKVRFMKEMYLPELSEMYQKIATKLQQHDSLPQQPKSEQLDKLKMFRTMLERLISVLQISKSSISPGLKDKLLLYEKQIVNFINTNRPRKPVSSLQQGQLPPPHMHSMQQSQSQMTQVQSHENQMNPQLQSMNLQGSAMPQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSSMDSGQGNALNSLQQVPVGSNQQTPVSAPQQANMNALSSQSGVNMLQANMNSIQSTSGMLQHQHLKQQQEHQMFQNSLKQQFQHRQMQQQLMQKQQLLQHQQQQQQQQQQQQLQLQAKQQLPAQLQAHQQQMPQLHQMNDVNDLKMRQGMGVKQGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGVGAQVQSLAIGTPGISASPLLAEFSVPDTHVNALSTISGKSSVTEQPLERLIKAVKSMSPNALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNVMTHDGTNGTRKMRRYTSAVPLNVVSSAGSMNDSFKQLTNSETSDLESTATSRIKRPRIEANHALLEEIREINRRLIDTVVNISDEDVDPSAAAAEGGEGTIVKCSFDAVALSPNLKSQYASAQMSPIQPLRLLVPMNYPNCSPILLDKFPVEVSKEYEDLSVKAKSKFSISLRSISQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1359
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-0.789
Instability index77.21
Isoelectric point9.43
Molecular weight150165.55
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14413
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     397.15|      58|      58|     331|     388|       1
---------------------------------------------------------------------------
  147-  216 (52.46/ 6.06)	S............QN..IQNNIPAA....G......VQSSAGLS.S..ALPPSsgltqtpipsivgQ..NQNMQNMGQgvPSNMFATSQRQLPGRQQVV
  262-  315 (69.36/10.81)	..V..........QQ..QQQQPNLLQ...P......TQLQSSQQ.P..VM..Q.............T..SSVIQPSVV..QSSLSSLQQNQQSAIQQST
  316-  383 (95.59/18.17)	PSMlqqhpqsvlrQP..QQQQASVVH...Q......QQTSMPQQ.P..ILPPQ.............Q..QQQQQLMVQ..QSNATSLSQNQLIGQQNNV
  384-  429 (73.32/11.92)	GDM..........QQ..QQQQQRLLS...Q......QN.......N..ILNLQ.............Q..QQQQQQQQQ..Q......QQQQLMAQQSNL
  516-  582 (52.92/ 6.20)	PQM..........QQlgLQQQSNPLQrdmQ......QRLQASGQvPgtMLQPQ.............NvmDQQKQLYQS..QRPLPETSSTSL.DSTAQT
  839-  890 (53.50/ 6.36)	..............H..QMFQNSLKQ...QfqhrqmQQQLMQKQ.Q..LLQHQ.............Q..QQQQQ...Q..QQQ.....QLQLQAKQQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.52|      19|      20|     464|     482|       2
---------------------------------------------------------------------------
  431-  449 (34.31/ 8.84)	NMHQPQLG....PQSNVTGLQQQ
  464-  482 (33.14/ 8.21)	NQHSVHLL....QQSKVQGQQQQ
  484-  506 (29.07/ 6.02)	HQSSSNLLppqgQQSQPQASQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.08|      16|      19|     794|     810|       3
---------------------------------------------------------------------------
  732-  747 (25.69/ 7.36)	SAMPQSNMTSL.QQSSM
  795-  811 (25.39/10.30)	SAPQQANMNALsSQSGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.15|      19|      19|     935|     953|       4
---------------------------------------------------------------------------
  935-  951 (28.83/10.81)	....AYPHPQLK.SGSPFPTNQ
  952-  971 (22.51/ 6.56)	LLqaASPQISQH.S.SPQVDQQ
  989- 1008 (25.82/ 8.78)	PF..VIPSPSTPmAPSPMPGDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.64|      17|      19|     218|     234|       6
---------------------------------------------------------------------------
  218-  234 (29.26/ 7.77)	QQQQQQQQQQQSQNSQQ
  239-  255 (30.37/ 8.43)	QQLQHQQHPLLKPKYQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     244.32|      56|     109|    1079|    1134|       7
---------------------------------------------------------------------------
 1011- 1060 (49.31/27.33)	............PSSLSNA.GNVGhqqttGVGAQVQSLA..IGTPGISASPLL..AE..FSVPDTHVNA
 1079- 1134 (87.63/54.42)	IKAVKSM....SPNALSASVSDIG.....SVVSMIDRIA..GSAPGNGSRAAV..GEDLVAMTKCRLQA
 1143- 1191 (53.03/29.95)	TNGTRKMrrytSAVPLNV.VSSAG........SMNDSFK..QLTNSETS........DLESTATSRIK.
 1195- 1245 (54.34/30.88)	IEA.........NHALLEEIREIN.....R..RLIDTVVniSDEDVDPSAAAAegGEG..TIVKCSFDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.87|      14|      19|     106|     122|       8
---------------------------------------------------------------------------
  106-  122 (23.64/20.83)	GNSNRPPDPGSfgmQPQ
  127-  140 (26.23/12.78)	GQSLSMPLPAN...QSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.55|      46|     647|      10|      55|      11
---------------------------------------------------------------------------
   10-   55 (82.68/60.17)	QVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLP............FSGHEGLQE
  583-  628 (48.05/31.06)	..GHA..TGGDW....QEEVFQKV..RFMKEM..YLPelsemyqkiatkLQQHDSLPQ
  653-  692 (63.82/44.32)	QISKSSISPG.LKDKLLLYEKQ.IVN.FINTNRPRKP............VSS...LQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14413 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTL
2) METKSQNTMANSLQSNSAGNSNRPPDPGSFGMQPQVPNQGQSLSMPLPANQSQARQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQNMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQQQQSQNSQQYMYHQQLQHQQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSS
3) QNQQSAIQQSTPSMLQQHPQSVLRQPQQQQASVVHQQQTSMPQQPILPPQQQQQQQLMVQQ
4) QQQQQQLMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPPQGQQSQPQASQQQLLSQIQSQPPQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNVMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGG
5) TNRPRKPVSSLQQGQLPPPHMHSMQQSQSQMTQVQSHENQMNPQLQSMNLQGSAMPQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSSMDSGQGNALNSLQQVPVGSNQQTPVSAPQQANMNALSSQSGVNMLQANMNSIQSTSGMLQHQHLKQQQEHQMFQNSLKQQFQHRQMQQQLMQKQQLLQHQQQQQQQQQQQQLQLQAKQQLPAQLQAHQQQMPQLHQMNDVNDLKMRQGMGVKQGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGVGAQVQSL
1
88
305
416
680
41
280
365
588
1035










Molecular Recognition Features






MoRF SequenceStartStop




1) IVNFI
674
678