<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14407

Description Uncharacterized protein
SequenceMDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETLKRHLPFSSQEGLQELKKIAVRFEEKIYAAATSQSDYLRKISLKMLTMEIKSQNTMANSLQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEVSFFTELGPIFLHQSSEGNIEHKKKSSEGSLLTELVPTFLDQSSEDNIDLKKRSSEDSISPTRHANGVDWQEEVYQEIEVMKEMYLPELSEMYQRFASYLLQHNSLPQPPKSKQLDKLNFFKAMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFININGRRKPVSSLHQGQLPPSRSAATLQQNNMARLQQSSMSSLSGTAQQNMMYWLQPSSNMFWLHPSYNLDSGQGNTLNSLQQFALGSAPQTPVSASQQANVNALSSQSGVSILQNISSEWTFLTASFVLEILSAACEQLSSRNKPLYAQGGLLFAIAAFLICIWDLVDKVIKDRIVLRRREMLRILHYPSPRNTPCFNLADYYGLAGAVYQLFSATFEWFHVRKGVDNPIKFSIMPLVFLVLLACSRARVERCTIDETLEDIV
Length625
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.08
Grand average of hydropathy-0.473
Instability index76.89
Isoelectric point4.97
Molecular weight70138.30
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14407
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.20|      27|      27|     178|     204|       1
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  178-  204 (55.30/28.53)	SFLTELVPIFLDQSSEGNIDRKKESSE
  206-  232 (55.39/28.58)	SFFTELGPIFLHQSSEGNIEHKKKSSE
  234-  260 (52.52/26.80)	SLLTELVPTFLDQSSEDNIDLKKRSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.06|      19|      21|      28|      46|       2
---------------------------------------------------------------------------
    4-   22 (24.53/ 8.66)	.DNEKPRPPQGGssEPSMD.T
   28-   46 (41.89/19.20)	DDNESPSEDEDG..EPSMSPS
   52-   70 (40.64/18.44)	EPSMSPSEDEDG..EPSMSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.77|      20|      29|     314|     342|       3
---------------------------------------------------------------------------
  314-  335 (28.44/34.76)	PKSKqlDKLNFFKAMLERLISV
  345-  364 (32.34/15.43)	PGLK..DKLVLYEKQIVNFINI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.84|      14|      18|     391|     404|       4
---------------------------------------------------------------------------
  391-  404 (24.90/15.66)	N.NMARLQQSS.MSSL
  411-  425 (25.35/16.10)	N.MMYWLQPSSnMFWL
  428-  442 (16.60/ 7.69)	SyNLDSGQGNT.LNSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14407 with Med15 domain of Kingdom Viridiplantae
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