<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14406

Description Uncharacterized protein
SequenceMDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETLKRHLPFSSQEGLQELKKIAVRFEEKIYAAATSQSDYLRKISLKMLTMEIKSQNTMANSLQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEVSFFTELGPIFLHQSSEGSLLTELVPTFLDQSSEDNIDLKKRSSEVPTPDSISPTRHANGVDWQEEVYQEIEVMKEMYLPELSEMYQRFASYLLQHNSLPQPPKSKQLDKLNFFKAMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFININGRRKPVSSLHQGQLPPSRMHSMQLSQSHITRVQSHENQINPQMLLMNLQGSAATLQQNNMARLQQSSMSSLSGTAQQNMMYWLQPSSNMFWLHPSYNLDSGQGNTLNSLQQFALGSAPQTPVSASQQANVNALSSQSGVSILQNISSEWTFLTASFVLEILSAACEQLSSRNKPLYAQGGLLFAIAAFLICIWDLVDKVIKDRIVLRRREMLRILHYPSPRNTPCFNLADYYGLAGAVYQLFSATFEWFHVRKGVDNPIKFSIMPLVFLVLLACSRARVERCTIDETLEDIV
Length650
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.448
Instability index75.19
Isoelectric point4.99
Molecular weight73008.65
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14406
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.53|      19|      21|      28|      46|       1
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    4-   22 (24.93/10.04)	.DNEKPRPPQGGssEPSMD.T
   28-   46 (41.82/21.74)	DDNESPSEDEDG..EPSMSPS
   52-   70 (40.79/21.03)	EPSMSPSEDEDG..EPSMSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.11|      43|      43|     171|     213|       2
---------------------------------------------------------------------------
  171-  213 (80.06/63.89)	LQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEVSFFTELGP
  216-  258 (80.05/63.88)	LHQSSEGSLLTELVPTFLDQSSEDNIDLKKRSSEVPTPDSISP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.17|      28|      28|     364|     391|       4
---------------------------------------------------------------------------
  361-  388 (52.26/29.68)	RKPVSSLH..QGQLPPS.......RMHSMQLSQSHIT
  389-  412 (18.87/ 6.08)	RVQS.............henqinpQMLLMNLQGSAAT
  420-  442 (25.04/10.44)	RLQQSSMSslSGTAQQN.......MMYWLQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.95|      34|     169|     291|     346|       6
---------------------------------------------------------------------------
  310-  346 (44.59/27.92)	KQLDKLNFFKAmlERLISVLQiSKSSISPGLKDKLVL
  483-  516 (55.37/48.07)	SQQANVNALSS..QSGVSILQ.NISSEWTFLTASFVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14406 with Med15 domain of Kingdom Viridiplantae
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