<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14402

Description Uncharacterized protein
SequenceMDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRPPDPGSFGMQPQVPNQGQSLSMPLPANQSQARQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQNMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQQQQSQNSQQYMYHQQLQHQQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPSVVQSSLSSLQQNQQSAIQQSTPSMLQQHPQSVLRQPQQQQASVVHQQQTSMPQQPILPPQQQQQQQLMVQQSNATSLSQNQLIGQQNNVGDMQQQQQQQRLLSQQNNILNLQQQQQQQQQQQQQQQQLMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPPQGQQSQPQASQQQLLSQIQSQPPQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNVMDQQKQLYQSQRPLPETSSNSTAQTGHATGGDWQEEVFQKIKVMKEMYLPELSEMYQKIATKLQQHDSLPQQPKSEQLDKLKMFRTMLERLISVLQISKSSISPGLKDKLLLYEKQIVNFINTNRPRKPVSSLQQGQLPPPHMHSMQQSQSQMTQVQSHENQMNPQLQSMNLQGSAMPQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSSMDSGQGNALNSLQQVPVGSNQQTPVSAPQQANMNALSSQSGVNMLQANMNSIQSTSGMLQHQHLKQQQEHQMFQNSLKQQFQHRQMQQQLMQKQQLLQHQQQQQQQQQQQQLQLQAKQQLPAQLQAHQQQMPQLHQMNDVNDLKMRQGMGVKQGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGVGAQVQSLAIGTPGISASPLLAEFSVPDTHVNALSTISGKSSVTEQPLERLIKAVKSMSPNALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNVMTHDGTNGTRKMRRYTSAVPLNVVSSAGSMNDSFKQLTNSETSDLESTATSRIKRPRIEANHALLEEIREINRRLIDTVVNISDEDVDPSAAAAEGGEGTIVKCSFDAVALSPNLKSQYASAQMSPIQPLRLLVPMNYPNCSPILLDKFPVEVSKEYEDLSVKAKSKFSISLRSISQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1356
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-0.791
Instability index77.09
Isoelectric point9.45
Molecular weight149801.20
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14402
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     601.42|      58|      58|     331|     388|       1
---------------------------------------------------------------------------
  167-  220 (54.07/ 6.98)	.....SAL.P.........PSSGLTQTPI.PSivG.QNQ......NMQNM...GQgvPSNMFATSQRQL.PGRQQVVP.Q...........QQ
  221-  264 (55.87/ 7.51)	QQQ.Q...QQ.........QQSQNSQQYMYHQ..QlQHQ......QHPLLkpkYQ..QGNIPQL................V..........QQ
  265-  330 (68.39/11.20)	QQQQPNLLQP.........TQLQSSQQPVM....Q.TSS......VIQPS...VV..QSSLSSLQQNQQ.SAIQQSTP.SMlqqhpqsvlrQP
  331-  388 (108.64/23.05)	QQQQASVVHQ.........QQTSMPQQPILPP..Q.QQQ......QQQLM...VQ..QSNATSLSQNQL.IGQQNNVG.DM..........QQ
  389-  434 (71.07/11.99)	QQQQQRLLSQ.........QN......NILNL..Q.QQQ......QQQQQ...QQ..Q......QQQQL.MAQQSNLS.NM..........HQ
  480-  536 (66.97/10.78)	QQQQ....HQ.........SSSNL.....LPP..Q.GQQsqpqasQQQLL...SQ.iQSQPPQMQQLGL.QQQSNPLQrDM..........QQ
  541-  589 (59.42/ 8.56)	SGQVPGTMLQ.........PQNVMDQQKQL......YQS......QRPLP...ET..SSNSTA..QT....GHATG.G.DW..........QE
  837-  892 (64.08/ 9.93)	QMFQNSLKQQ...fqhrqmQQQLMQKQQLLQH..Q.QQQ......QQQ......Q..QQQ.....QLQL.QAKQQLPA.QL..........QA
  893-  951 (52.91/ 6.64)	HQQQMPQLHQmndvndlkmRQGMGVKQGVF...............QQHLS...AG..QR...AYPHPQLkSGSPFPTN.QL..........LQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.58|      16|      19|     791|     807|       2
---------------------------------------------------------------------------
  729-  744 (25.16/ 6.47)	SAMPQSNMTSL.QQSSM
  792-  808 (25.43/ 9.60)	SAPQQANMNALsSQSGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.73|      27|      56|     754|     780|       3
---------------------------------------------------------------------------
  704-  727 (28.12/ 6.24)	QSQMTQ.VQShENQMNP.QLQSMN.LQ.
  754-  780 (49.05/17.44)	QQNMMNSLPP.SSSMDSGQGNALNSLQQ
  812-  835 (42.57/13.97)	QAN.MNSIQS.TSGM..LQHQHLKQQQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.73|      16|      20|     122|     140|       4
---------------------------------------------------------------------------
  101-  116 (29.14/ 7.29)	QSNSAGNSNRPPDPGS
  122-  137 (30.60/10.26)	QVPNQGQSLSMPLPAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.03|      11|      56|     977|     987|       5
---------------------------------------------------------------------------
  977-  987 (19.93/ 8.52)	GTPLQTASSPF
  993- 1003 (18.10/ 6.94)	STPMAPSPMPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.70|      19|      21|     592|     612|       6
---------------------------------------------------------------------------
  592-  611 (28.81/23.88)	FQKIKVMKEMyLPELSEMYQ
  632-  650 (30.89/14.89)	LDKLKMFRTM.LERLISVLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      13|      19|      56|      72|       8
---------------------------------------------------------------------------
   56-   72 (15.33/25.00)	LKKIAVrfeeKIYTAAT
   78-   90 (22.09/17.83)	LRKISL....KMLTMET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.17|      10|      19|    1212|    1221|      10
---------------------------------------------------------------------------
 1212- 1221 (16.47/11.58)	TVVNISDEDV
 1234- 1243 (17.71/12.95)	TIVKCSFDAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.61|      24|      28|    1035|    1062|      11
---------------------------------------------------------------------------
 1035- 1059 (37.24/29.77)	GTPGISASPL..LAEfSVPDTHVNALS
 1063- 1088 (35.37/15.53)	GKSSVTEQPLerLIK.AVKSMSPNALS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14402 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTL
2) METKSQNTMANSLQSNSAGNSNRPPDPGSFGMQPQVPNQGQSLSMPLPANQSQARQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQNMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQQQQSQNSQQYMYHQQLQHQQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSS
3) QNQQSAIQQSTPSMLQQHPQSVLRQPQQQQASVVHQQQTSMPQQPILPPQQQQQQQLMVQQ
4) QQQQQQLMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPPQGQQSQPQASQQQLLSQIQSQPPQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNVMDQQKQLYQSQRPLPETSSNSTAQTGHATGG
5) TNRPRKPVSSLQQGQLPPPHMHSMQQSQSQMTQVQSHENQMNPQLQSMNLQGSAMPQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSSMDSGQGNALNSLQQVPVGSNQQTPVSAPQQANMNALSSQSGVNMLQANMNSIQSTSGMLQHQHLKQQQEHQMFQNSLKQQFQHRQMQQQLMQKQQLLQHQQQQQQQQQQQQLQLQAKQQLPAQLQAHQQQMPQLHQMNDVNDLKMRQGMGVKQGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGVGAQVQSL
1
88
305
416
677
41
280
365
585
1032










Molecular Recognition Features






MoRF SequenceStartStop




1) IVNFI
671
675