<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14401

Description Uncharacterized protein
SequenceMIFSFYFTKNTSLTVLGRIVFHCSYRFCRQCFFKIITLIIKFCTILCAYIDTYFCIASPDSAAQTGHATRGDWQEVVYQKANMNSIQSNSGMLQHQHIKQQQEQEINYVNELKMRRAAGQCAFSHQQLKSGSPFPISSTTQFLQAASPKISRHSSPQNDQQNLLAHTKAGTSSSPFVIPSPSTPMAPSSVPGDSEKPSSLANAGKIGQLQATVVGSQIQSLAIGTPGISASPLLAEFSVPDGTHVNALSTISGKSNVTEQPLERLIKAVKSMSSNALSASVSDIGSVVSMSRIAGSAPGKGSRDAVGEDLITMTKCCLQGRNVLTRDGTNGSRKIRRFTSAVPLNVVPSAGNDCFRQLASSETSDLESTVTSRIKRPRIEANHALLEEIREIRQRLINTVVDISDQDDDPSAPAADGGKGTIFKCFFDAVAFGLDLKSQYASAQMSPIHPLRLLVPSNYPNCSPILLDKFPVEVSKEYEDLSVKAKSKFSISLRSISEPMSLGEIARTWDVCACAVISEHAQQSGGGSFSSRYGTWENCLSAA
Length543
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.184
Instability index52.20
Isoelectric point8.64
Molecular weight58656.85
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14401
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.43|      14|      17|     266|     279|       1
---------------------------------------------------------------------------
  266-  279 (24.40/17.35)	IKAVKSMSSNALSA
  284-  297 (24.03/16.97)	IGSVVSMSRIAGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.92|      16|      17|     455|     470|       2
---------------------------------------------------------------------------
  455-  470 (30.30/18.15)	VPSNYPNCSPILLDKF
  474-  489 (25.62/14.40)	VSKEYEDLSVKAKSKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.54|      52|      54|     124|     175|       3
---------------------------------------------------------------------------
   86-  120 (30.50/12.56)	...................IQSNSGMLQhQ.HIKQQQEQEiNYVNELKMRRAAGQ
  124-  175 (86.39/48.72)	SHQQLKSGSPFPISSTTQFLQAASPKIS.R.HSSPQNDQQ.NLLAHTKAGTSSSP
  180-  232 (78.66/43.72)	SPSTPMAPSSVPGDSEKPSSLANAGKIG.QlQATVVGSQI.QSLAIGTPGISASP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14401 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AASPKISRHSSPQNDQQNLLAHTKAGTSSSPFVIPSPSTPMAPSSVPGDSEKPSSLANAGKI
145
206










Molecular Recognition Features






MoRF SequenceStartStop




NANANA