<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14400

Description Uncharacterized protein
SequenceMDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETLKRHLPFSSQEGLQELKKIAVRFEEKIYAAATSQSDYLRKISLKMLTMEIKSQNTMANSLQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEVSFFTELGPIFLHQSSEGNIEHKKKSSEGSLLTELVPTFLDQSSEDNIDLKKRSSEDSISPTRHANGVDWQEEVYQEHNSLPQPPKSKQLDKLNFFKAMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFININGRRKPVSSLHQGQLPPSRMHSMQLSQSHITRVQSHENQINPQMLLMNLQGSAATLQQNNMARLQQSSMSSLSGTAQQNMMYWLQPSSNMFWLHPSYNLDSGQGNTLNSLQQFALGSAPQTPVSASQQANVNALSSQSGVSILQLF
Length485
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.744
Instability index83.95
Isoelectric point4.91
Molecular weight53986.46
Publications
PubMed=23525075

Function

Annotated function 
ECO:0000256	ARBA:ARBA00003861
	 href='https://www.uniprot.org/unirule/RU364143' style='color:#FF0000;'>RuleBase:RU364143
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.06|      19|      21|      28|      46|       1
---------------------------------------------------------------------------
    4-   22 (24.53/ 7.71)	.DNEKPRPPQGGssEPSMD.T
   28-   46 (41.89/17.46)	DDNESPSEDEDG..EPSMSPS
   52-   70 (40.64/16.76)	EPSMSPSEDEDG..EPSMSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.20|      27|      27|     178|     204|       2
---------------------------------------------------------------------------
  178-  204 (55.30/35.51)	SFLTELVPIFLDQSSEGNIDRKKESSE
  206-  232 (55.39/35.58)	SFFTELGPIFLHQSSEGNIEHKKKSSE
  234-  260 (52.52/33.36)	SLLTELVPTFLDQSSEDNIDLKKRSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      93.14|      16|      19|     396|     411|       3
---------------------------------------------------------------------------
  365-  375 (16.59/ 6.01)	SQSHITRVQ......SH
  396-  411 (29.34/16.59)	QQNNMARLQQSS.MSSL
  416-  432 (29.18/16.46)	QQNMMYWLQPSSnMFWL
  442-  456 (18.03/ 7.21)	QGNTLNSLQQFA.LGS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.01|      27|      29|     295|     321|       4
---------------------------------------------------------------------------
  263-  292 (39.73/25.82)	ISPTrhaNGVDWQEEVYQEHNSLPQPPK..SK
  295-  317 (28.24/16.22)	.......DKLNFFKAMLERLISVLQISK..SS
  318-  348 (33.04/20.23)	ISPG.lkDKLVLYEKQIVNFININGRRKpvSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14400 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKKRSSEDSISPTRHANGVDWQEEVYQEHNSLPQPPKSK
2) MDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETL
254
1
292
112










Molecular Recognition Features






MoRF SequenceStartStop




1) NEKPRPPQG
2) PSMDTDKMYADDNESPSEDED
5
18
13
38