<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14398

Description Uncharacterized protein
SequenceMDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETLKRHLPFSSQEGLQELKKIAVRFEEKIYAAATSQSDYLRKISLKMLTMEIKSQNTMANSLQSYSDESFLTELVPIFLDQSSEGNIDRKKESSEVSFFTELGPIFLHQSSEGNIEHKKKSSEGSLLTELVPTFLDQSSEDNIDLKKRSSEDSISPTRHANGVDWQEEVYQEHNSLPQPPKSKQLDKLNFFKAMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFININGRRKPVSSLHQGQLPPSRMHSMQLSQSHITRVQSHENQINPQMLLMNLQGSAATLQQNNMARLQQSSMSSLSGTAQQNMMYWLQPSSNMFWLHPSYNLDSGQGNTLNSLQQFALGSAPQTPVSASQQANVNALSSQSGVSILQNISSEWTFLTASFVLEILSAACEQLSSRNKPLYAQGGLLFAIAAFLICIWDLVDKVIKDRIVLRRREMLRILHYPSPRNTPCFNLADYYGLAGAVYQLFSATFEWFHVRKGVDNPIKFSIMPLVFLVLLACSRARVERCTIDETLEDIV
Length632
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.494
Instability index76.02
Isoelectric point5.12
Molecular weight70757.92
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14398
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.06|      19|      21|      28|      46|       1
---------------------------------------------------------------------------
    4-   22 (24.53/10.37)	.DNEKPRPPQGGssEPSMD.T
   28-   46 (41.89/23.04)	DDNESPSEDEDG..EPSMSPS
   52-   70 (40.64/22.13)	EPSMSPSEDEDG..EPSMSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.20|      27|      27|     178|     204|       2
---------------------------------------------------------------------------
  178-  204 (55.30/31.24)	SFLTELVPIFLDQSSEGNIDRKKESSE
  206-  232 (55.39/31.30)	SFFTELGPIFLHQSSEGNIEHKKKSSE
  234-  260 (52.52/29.35)	SLLTELVPTFLDQSSEDNIDLKKRSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.07|      44|      53|     262|     314|       3
---------------------------------------------------------------------------
  262-  314 (66.75/63.54)	SISPTRHANGVDWQEEV..YQEHNSLPQPPKS...KQLDKlnffkamlERLISvLQIS
  317-  365 (67.32/42.91)	SISPGLKDKLVLYEKQIvnFININGRRKPVSSlhqGQLPP........SRMHS.MQLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.58|      42|      53|     366|     418|       4
---------------------------------------------------------------------------
  370-  418 (66.95/49.00)	TRVQSHENQ..INPQMLLMNLQGsaatlqqNNMARLQQSSMSS.....LSGTAQQN
  421-  469 (64.63/28.85)	YWLQPSSNMfwLHPSYNLDSGQG.......NTLNSLQQFALGSapqtpVSASQQAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.49|      23|      45|      97|     125|       8
---------------------------------------------------------------------------
   97-  119 (42.00/36.70)	QPDTRQKIVNKI..ME.....TLKRHL.PFS
  145-  175 (25.49/ 8.63)	QSDYLRKISLKMltMEiksqnTMANSLqSYS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14398 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKKRSSEDSISPTRHANGVDWQEEVYQEHNSLPQPPKSK
2) MDTDNEKPRPPQGGSSEPSMDTDKMYADDNESPSEDEDGEPSMSPSEDEDGEPSMSPSEDEDGEPSMSPSGFGLPLMSPSGDGDPSMGTGDWRNQLQPDTRQKIVNKIMETL
254
1
292
112










Molecular Recognition Features






MoRF SequenceStartStop




1) NEKPRPPQG
2) PSMDTDKMYADDNE
5
18
13
31