<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14395

Description Uncharacterized protein
SequenceMDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRPPDPGSFGMQPQVPNQGQSLSMPLPANQSQARQQLLSQNIQNNIPAAGVQSSAGLSSALPPSSGLTQTPIPSIVGQNQNMQNMGQGVPSNMFATSQRQLPGRQQVVPQQQQQQQQQQQSQNSQQYMYHQQLQHQQHPLLKPKYQQGNIPQLVQQQQQQPNLLQPTQLQSSQQPVMQTSSVIQPSVVQSSLSSLQQNQQSAIQQSTPSMLQQHPQSVLRQPQQQQASVVHQQQTSMPQQPILPPQQQQQQQLMVQQSNATSLSQNQLIGQQNNVGDMQQQQQQQRLLSQQNNILNLQQQQQQQQQQQQQQQQLMAQQSNLSNMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPPQGQQSQPQASQQQLLSQIQSQPPQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNVMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGGDWQEEVFQKIKVMKEMYLPELSEMYQKIATKLQQHDSLPQQPKSEQLDKLKMFRTMLERLISVLQISKSSISPGLKDKLLLYEKQIVNFINTNRPRKPVSSLQQGQLPPPHMHSMQQSQSQMTQVQSHENQMNPQLQSMNLQGSAMPQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSSMDSGQGNALNSLQQVPVGSNQQTPVSAPQQANMNALSSQSGVNMLQANMNSIQSTSGMLQHQHLKQQQEHQMFQNSLKQQFQHRQMQQQLMQKQQLLQHQQQQQQQQQQQQLQLQAKQQLPAQLQAHQQQMPQLHQMNDVNDLKMRQGMGVKQGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGVGAQVQSLAIGTPGISASPLLAEFSVPDTHVNALSTISGKSSVTEQPLERLIKAVKSMSPNALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNVMTHDGTNGTRKMRRYTSAVPLNVVSSAGSMNDSFKQLTNSETSDLESTATSRIKRPRIEANHALLEEIREINRRLIDTVVNISDEDVDPSAAAAEGGEGTIVKCSFDAVALSPNLKSQYASAQMSPIQPLRLLVPMNYPNCSPILLDKFPVEVSKEYEDLSVKAKSKFSISLRSISQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1359
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-0.787
Instability index77.09
Isoelectric point9.42
Molecular weight150103.52
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14395
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     602.65|      58|      58|     331|     388|       1
---------------------------------------------------------------------------
   93-  146 (51.67/ 7.15)	.....................QNTMANSLQ...S.........NSAGNSNR.P..PDPGS.............F..GMQPQVP...NQ.gQSLSMPLPANQS.QAR.QQLL
  147-  216 (52.46/ 7.42)	S............QN......IQNNIPAA....G.........VQSSAGLS.S..ALPPSsgltqtpipsivgQ..NQNMQNM...GQgvPSNMFATSQRQL.PGR.QQVV
  217-  261 (50.26/ 6.67)	PQ...........QQ......QQQ.Q...Q...Q.........QQSQNSQQ.Y..MYHQQ............lQ..HQQHPLLkpkYQ..QGNIPQL..............
  262-  315 (69.35/13.15)	..V..........QQ......QQQQPNLLQ...P.........TQLQSSQQ.P..VM..Q.............T..SSVIQPS...VV..QSSLSSLQQNQQ.SAI.QQST
  316-  383 (95.59/22.05)	PSMlqqhpqsvlrQP......QQQQASVVH...Q.........QQTSMPQQ.P..ILPPQ.............Q..QQQQQLM...VQ..QSNATSLSQNQL.IGQ.QNNV
  384-  429 (73.32/14.50)	GDM..........QQ......QQQQQRLLS...Q.........QN.......N..ILNLQ.............Q..QQQQQQQ...QQ..Q......QQQQL.MAQ.QSNL
  469-  515 (51.55/ 7.11)	HLL..........QQskvqgqQQQQ....H...Q.........SSSNL........LPPQ.............G..QQSQP......Q..AS......QQQL.LSQiQSQP
  516-  582 (52.92/ 7.58)	PQM..........QQ....lgLQQQSNPLQrdmQ.........QRLQASGQvPgtMLQPQ.............NvmDQQKQLY...QS..QRPLPETSSTSL..DS.TAQT
  839-  890 (53.50/ 7.77)	..............H......QMFQNSLKQ...Q...fqhrqmQQQLMQKQ.Q..LLQHQ.............Q..QQQQQ......Q..QQQ.....QLQL.QAK.QQLP
  891-  949 (52.04/ 7.28)	AQL..........QA......HQQQMPQLH...QmndvndlkmRQGMGVKQ.G..VF.....................QQHLS...AG..QR...AYPHPQLkSGS.PFPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     277.55|      78|      89|     648|     736|       2
---------------------------------------------------------------------------
  607-  673 (65.96/25.50)	......................PELSEMYQ...KIA..TKL....QQHDS.LPQQ.....PK.SEQ.LDK.LKMfrtmlER..LI.SVLQISKSSISPGLKDklllyEKQ
  676-  758 (120.80/51.24)	NFINTnRPrkPVSSLQQGQlPPPHMHSMQQ...SQSQMTQV....QSHENQMNPQ.....LQ.SMN.LQG.SAM.....PQsnMT.SLQQSSMSALS.GVST.....AQQ
  759-  829 (51.51/10.41)	NMMNS.LP..PSSSMDSGQ..GNALNSLQQvpvGSNQQTPVsapqQANMNALSSQsgvnmLQaNMNsIQStSGM.....LQ.............................
 1054- 1096 (39.28/ 6.13)	....................PDTHVN.........ALST......ISGKSSVTEQ.....P.................lER..LIkAVKSMSPNALSASVSD........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.94|      19|      20|     964|     983|       3
---------------------------------------------------------------------------
  964-  983 (32.22/20.46)	SSP...............QVDQQNlLTHPKA.......GTPL
  987-  999 (25.86/11.11)	SSP...............FV.......IPSP.......STPM
 1001- 1041 (19.86/ 6.53)	PSPmpgdsekpsslsnagNVGHQQ.TTGVGAqvqslaiGTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.42|      16|      16|    1262|    1277|       4
---------------------------------------------------------------------------
 1262- 1277 (30.46/19.60)	SPI..QPLRLLVPMNYPN
 1279- 1296 (21.96/11.70)	SPIllDKFPVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      13|      19|      56|      72|       6
---------------------------------------------------------------------------
   56-   72 (15.33/25.10)	LKKIAVrfeeKIYTAAT
   78-   90 (22.09/17.86)	LRKISL....KMLTMET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.17|      10|      19|    1215|    1224|       7
---------------------------------------------------------------------------
 1215- 1224 (16.47/13.29)	TVVNISDEDV
 1237- 1246 (17.71/14.86)	TIVKCSFDAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14395 with Med15 domain of Kingdom Viridiplantae
Unable to open file!