<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14391

Description Uncharacterized protein
SequenceMATNNWRPPQVREPSMDAGNWGSQLQLESRPSIVNMIMDALKRHFPCSGQESSPELKKIAVRFEEMIYTAATSESDYFEKIALKIYSLETRSQNAIENSSPINSAGNINRPPDPDSAAQTGHATRGDWQEVVYQKANMNSIQSNSGMLQHQHIKQQQEQEINYVNELKMRRAAGQCAFSHQQLKSGSPFPISSTTQFLQAASPKISRHSSPQNDQQNLLAHTKAGTSSSPFVIPSPSTPMAPSSVPGDSEKPSSLANAGKIGQLQATVVGSQIQSLAIGTPGISASPLLAEFSVPDGTHVNALSTISGKSNVTEQPLERLIKAVKSMSSNALSASVSDIGSVVSMSRIAGSAPGKGSRDAVGEDLITMTKCCLQGRNVLTRDGTNGSRKIRRFTSAVPLNVVPSAGNDCFRQLASSETSDLESTVTSRIKRPRIEANHALLEEIREIRQRLINTVVDISDQDDDPSAPAADGGKGTIFKCFFDAVAFGLDLKSQYASAQMSPIHPLRLLVPSNYPNCSPILLDKFPVEVSKEYEDLSVKAKSKFSISLRSISEPMSLGEIARTWDVCACAVISEHAQQSGGGSFSSRYGTWENCLSAA
Length598
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.05
Grand average of hydropathy-0.390
Instability index57.16
Isoelectric point7.15
Molecular weight64471.70
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14391
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     365.00|      72|     231|     239|     310|       2
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  187-  237 (61.07/27.84)	....SPFPISSTTQFLQAASPK..IS.R.HSSPQNDQ...QNLLAHTKAG.......TSSS.P....FVIPSPS............
  239-  310 (112.70/56.79)	PMAPSSVPGDSEKPSSLANAGK..IG.QLQATVVGSQ...IQSLAIGTPG.......ISAS.PLLAEFSVPDGTHVNALSTISGKS
  342-  399 (43.85/18.17)	VVSMSRIAGSAPGKGSRDAVGEdlIT.MTKCCLQGRN...VLTRD.GTNGsrkirrfTSAV.PL......................
  402-  460 (62.62/28.70)	......VPSAGNDCFRQLASSE..TS.DLESTVTSR.........IKRPR.......IEANhALLEEIREIRQRLINTVVDISD..
  465-  542 (84.77/41.13)	PSAPAADGGKGTIFKCFFDAVA..FGlDLKSQYASAQmspIHPLRLLVPS....nypNCSP.ILLDKFPVEVSKEYEDLS.VKAKS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14391 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NAIENSSPINSAGNINRPPDPDSAAQTGHATRGDWQEVVYQKA
2) PFPISSTTQFLQAASPKISRHSSPQNDQQNLLAHTKAGTSSSPFVIPSPSTPMAPSSVPGDSEKPSSLANAGKI
94
188
136
261










Molecular Recognition Features






MoRF SequenceStartStop




NANANA