<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14378

Description Uncharacterized protein
SequenceMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEGSSGQSNESATKKQCVSPVPAAHDQEEALECKTLSEVLARLEKVPNLKIFTYERLDWLKRASSLPENESPSETLKDHNFHSSSKLRAGPLGDVAPDKVAVIELLFPSLFRAVVSLHPAGSTDPDAVAFFSPDEGGSYIHARGFSIYHVYKHITEHAAMALQYFIGVRAETALYTLLHWICSYQTLFTKVCSKCGRLLSMDRQSALLLPPVYRPYRQFSASNISSNLNLARAYHVGCYSEEL
Length292
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.10
Grand average of hydropathy-0.202
Instability index49.69
Isoelectric point8.11
Molecular weight32406.54
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14378
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.79|      25|      27|     123|     149|       1
---------------------------------------------------------------------------
  123-  149 (39.46/30.73)	ETLKDHNFHSSSKLRagPLGDVAPDKV
  153-  177 (42.33/26.40)	ELLFPSLFRAVVSLH..PAGSTDPDAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.49|      22|      32|      21|      42|       2
---------------------------------------------------------------------------
   21-   42 (35.66/32.31)	GQAGASAVDRTRLA.LKAFTDQK
   55-   77 (33.83/30.23)	GQSNESATKKQCVSpVPAAHDQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14378 with Med27 domain of Kingdom Viridiplantae
Unable to open file!