<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14377

Description Uncharacterized protein
SequenceMATKTGSLNYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFKLRRDRIAERLFSCRLTRCSGCDKMELAVPGGDGEDDDDDGGCKSGFDRDGGEVEAGASKESKVNSSRDDQGEMNMNQLSNYSYGLAEALTAEIEEESEIVGEVFRIKEIFNNCEEESDTVLFESLRKLQLMALNVETLKATEIGKAVNGLRKHGSKKIRHLARSLIDGWKDMVDEWVNATTALAEAMSDSVDPSFDDEEGLPSPPLDEGAFFATQTTSMELSQFFDGMDDFGNPRNNRDNGRKPSVEKQNIVKQKQQPSNEANVLPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDKVAIQKRQLTGQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNPHGKPGNHNRHWAHGRR
Length442
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.05
Grand average of hydropathy-0.954
Instability index43.27
Isoelectric point5.85
Molecular weight49813.04
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14377
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.50|      14|      18|      62|      76|       1
---------------------------------------------------------------------------
   62-   76 (23.13/17.36)	GCdKMELAVPGGDGE
   83-   96 (27.37/15.60)	GC.KSGFDRDGGEVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.07|      27|      27|     272|     298|       2
---------------------------------------------------------------------------
  242-  273 (37.65/19.05)	GLPSP..PLDEGaffatQTTSMELSQFFDGMDDF
  274-  300 (46.81/25.27)	GNPRN..NRDNG.....RKPSVEKQNIVKQKQQP
  301-  326 (26.60/11.54)	SNEANvlPKEN......KNEQVKKQEVVKPNK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.77|      15|      18|     357|     374|       3
---------------------------------------------------------------------------
  357-  374 (21.44/26.89)	DKVAIQ......KRQLtgqQDKFK
  377-  397 (20.33/13.91)	DEVAVQvkleatKRKL...QERYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.63|      12|      19|     136|     147|       5
---------------------------------------------------------------------------
  136-  147 (19.47/15.28)	EEESEIVGEVFR
  157-  168 (19.16/14.93)	EESDTVLFESLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14377 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SQFFDGMDDFGNPRNNRDNGRKPSVEKQNIVKQKQQPSNEANVLPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDKVAIQKRQLTGQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNPHGKPGNHNRHWAHGRR
264
442










Molecular Recognition Features






MoRF SequenceStartStop




1) KKIRH
2) KQGLARRNPH
3) NHNRHWAHGRR
198
418
432
202
427
442