<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14370

Description Uncharacterized protein
SequenceMANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVVPAPHSQEFISVASQNFQHVGRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAIPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQYTGERPAVTSSIAPETGVRPNSAGGTVAEWREHTSAEGRRFYYNRRTGLSTWEKPFELMTPLERADASTNWKEFTSPDGRKYYYNKVTKESRWIMPEELKLARELVEKAPVKEMQQEMLVNHHAPVTVSPPVAEADTLVNAAQVASSPVSVAPVIATGDGDVQTAAASRSSTSPVVASPVIENPNGVHTPVVVPSSTVSSVEAAVTINDTVAEPMESSNNLSAQDFVSSADGVLVQENEEAMDDVTGKKMNDIASEEKPVDREPISYENKLEAKDAFKALLESTNIGSDWTWDRAMRVIINDKRYGALKTLGERKQAFNEFLVQRKKQEAEERRIKQKKAREEFKKMLEECSELTSSTRWGKVESIFEHDERFKAVERDRDRRDMFENYVEELQKKERAKAMEERKHNIMEYRQFLESCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQRRIQKEELRKTERKNRDDFRKLMEEHLAAGTLTAKSHWRDYCMKVKDLPTYLAVASNTSGSTPKDLFEDVVEELQKQYHEDKTRIKDAVKLGKVMLTSTWKLEDFKTVISNDIGSPPISDANLKFQSLPVKLPGYMLDDELCSTLWDELVFDELLERVKEKEEKEAKKRKRLADDFSHLLSSIKEITPSSKWEDYKSLLEGSQECSAIGEESFCKEIFDKHVMQLKEQAKEKERKRKEEKEKKEKERDDRERRRTKQRREKEVEYEREREERLKKDGLDSEIADVMDIHDSKEKKRSGKDDNKKHRKRHHSDEDHANGNENDRSKRSHGSSSDHKKSRRQAPGHESDTESRHRRHKRDHRNGSRRSGDHDELEDGEFGDVGESR
Length1036
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-1.037
Instability index58.55
Isoelectric point6.24
Molecular weight118733.25
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14370
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     486.28|      66|      67|     517|     582|       1
---------------------------------------------------------------------------
  457-  514 (67.70/35.26)	........EAKD.AFKALL.E...STNIGS.....DWTWDRAMRVII.NDKRYGALK........TLGE.....RKQAFNEFL.VQR....KKQE
  517-  582 (104.09/58.11)	ER.RIKQKKARE.EFKKMLEE...CSELTS.....STRWGKVESIFE.HDERFKAVE........RDRD.....RRDMFENYV.EEL....QKKE
  585-  649 (90.63/49.66)	KA.MEERKHNIM.EYRQFLES...CDFIKA.....SSQWRKVQDRLE.ADERCSRLE........K.ID.....RLEIFQEYL.RDL....EKEE
  659-  730 (77.30/41.29)	EL.RKTERKNRD.DFRKLMEEhlaAGTLTA.....KSHWRDYCMKVK.DLPTYLAVA........SNTS..gstPKDLFEDVV.EEL....QKQY
  733-  814 (47.93/22.85)	DKtRIKD..AVK.LGKVMLTS...TWKLEDfktviSNDIGS.PPISD.ANLKFQSLPvklpgymlDDEL.....CSTLWDELVfDELlervKEKE
  817-  880 (71.98/37.95)	EA.K.KRKRLAD.DFSHLLSS...IKEITP.....SSKWEDYKSLLE.GSQECSAI.............geesfCKEIFDKHV.MQL....KEQ.
  904-  946 (26.65/ 9.50)	RR.RTKQRREKEvEYEREREE.....RLKK.....DGLDSEIADVMDiHDSKEK.........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     184.16|      30|      32|      68|      97|       2
---------------------------------------------------------------------------
    4-   29 (27.10/ 9.90)	......NP..QF....SglQPLR..P.PMVGsvDPPRSL.PP
   38-   64 (27.30/10.02)	VPAP.HSQ..EFisvaS..QNFQHV..........GRGVpLM
   68-   97 (63.96/33.00)	LPPPTHQP..QF....S..QPMQQLP.PRSG..QPGHGM.LP
  101-  131 (41.09/18.67)	IPLPVSQPnrNF....A..SEL.PLPqPNSQ..GPNNAM..P
  137-  157 (24.71/ 8.40)	RTPLSSSY..TF....A..PSSYGQM.PRS............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.61|      35|      68|     295|     332|       3
---------------------------------------------------------------------------
  291-  328 (50.77/39.25)	VEKAPVKEMQQEMLVNHhapVTVSPPVAEADTLVNAAQ
  329-  350 (31.58/16.10)	VASSP...............VSVAPVIATGDGDVQTA.
  380-  410 (41.25/23.23)	..SSTVSSVEAAVTIND....TVAEPMESSNNL.SAQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.39|      39|      43|     205|     243|       4
---------------------------------------------------------------------------
  173-  194 (32.94/14.05)	PNvSSEGQVTPLQ..........Y....TG....ERPAVT
  205-  243 (75.95/41.12)	PN.SAGGTVAEWREHTSAEGRRFYYNRRTGLSTWEKPFEL
  246-  284 (72.49/38.95)	PL.ERADASTNWKEFTSPDGRKYYYNKVTKESRWIMPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.74|      16|      17|     952|     967|       5
---------------------------------------------------------------------------
  952-  967 (31.33/17.82)	DDNKKHRKRHHSDEDH
  971-  986 (27.41/14.59)	NENDRSKRSHGSSSDH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14370 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APVIATGDGDVQTAAASRSSTSPVVASPVIENPNGVHTPVVVPS
2) ENEEAMDDVTGKKMNDIASEEKPVDREPISY
3) GRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAIPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQYTGERPAVTSSIAPETGVRPNSAGGTVAEWR
4) LKEQAKEKERKRKEEKEKKEKERDDRERRRTKQRREKEVEYEREREERLKKDGLDSEIADVMDIHDSKEKKRSGKDDNKKHRKRHHSDEDHANGNENDRSKRSHGSSSDHKKSRRQAPGHESDTESRHRRHKRDHRNGSRRSGDHDELEDGEFGDVGESR
5) MANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVV
337
422
58
877
1
380
452
216
1036
38










Molecular Recognition Features






MoRF SequenceStartStop




NANANA