<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14369

Description Uncharacterized protein
SequenceMANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVVPAPHSQEFISVASQNFQHVGRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAIPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQYTGERPAVTSSIAPETGVRPNSAGGTVAEWREHTSAEGRRFYYNRRTGLSTWEKPFELMTPLERADASTNWKEFTSPDGRKYYYNKVTKESRWIMPEELKLARELVEKAPVKEMQQEMLVNHHAPVTVSPPVAEADTLVNAAQVASSPVSVAPVIATGDGDVQTAAASRSSTSPVVASPVIENPNGVHTPVVVPSSTVSSVEAAVTINDTVAEPMESSNNLSAQDFVSSADGVLVQENEEAMDDVTGKKMNDIASEEKPVDREPISYENKLEAKDAFKALLESTNIGSDWTWDRAMRVIINDKRYGALKTLGERKQAFNEFLVQRKKQEAEERRIKQKKAREEFKKMLEECSELTSSTRWGKVESIFEHDERFKAVERDRDRRDMFENYVEELQKKERAKAMEERKHNIMEYRQFLESCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQRRIQKEELRKTERKNRDDFRKLMEEHLAAGTLTAKSHWRDYCMKVKDLPTYLAVASNTSGSTPKDLFEDVVEELQKQYHEDKTRIKDAVKLGKVMLTSTWKLEDFKTVISNDIGSPPISDANLKFQSLPVKLPGYMLDDELCSTLWDEVVITYKHSRSCNE
Length813
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.750
Instability index54.99
Isoelectric point5.81
Molecular weight92032.42
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14369
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     352.13|      66|      67|     517|     582|       1
---------------------------------------------------------------------------
  457-  514 (77.86/45.95)	..............EAKDAFKALL.E...STNIGSDWTWD....RAMRVIINDKRYGALKTLGE...RKQAFNEFLVQRKKQE
  517-  582 (109.04/67.14)	ERRIK.......QKKAREEFKKMLEE...CSELTSSTRWG....KVESIFEHDERFKAVERDRD...RRDMFENYVEELQKKE
  585-  649 (99.16/60.42)	KAMEE.......RKHNIMEYRQFLES...CDFIKASSQWR....KVQDRLEADERCSRLEK.ID...RLEIFQEYLRDLEKEE
  652-  729 (66.06/37.93)	QRRIQkeelrktERKNRDDFRKLMEEhlaAGTLTAKSHWRdycmKVKDL....PTYLAVASNTSgstPKDLFEDVVEELQKQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.16|      11|      31|      25|      36|       2
---------------------------------------------------------------------------
   63-   75 (11.07/ 6.89)	LMNVRLpPpTHQP
   98-  108 (18.09/ 6.65)	SQAIPL.P.VSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.88|      20|      67|       6|      29|       3
---------------------------------------------------------------------------
    6-   29 (33.05/25.48)	QFSglQPLR..PPMVGsvDPPRSLPP
   76-   97 (38.83/18.47)	QFS..QPMQqlPPRSG..QPGHGMLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.58|      20|      20|     313|     332|       4
---------------------------------------------------------------------------
  313-  332 (33.19/20.49)	VSPPVAEADTLVNAAQVASS
  336-  353 (26.04/14.44)	VAPVIATGDGDVQTA..AAS
  362-  381 (29.61/17.46)	ASPVIENPNGVHTPVVVPSS
  386-  403 (24.74/13.35)	VEAAVTINDTV..AEPMESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.73|      11|      16|     231|     246|       5
---------------------------------------------------------------------------
  231-  242 (18.32/ 7.83)	RTGLST.WeKPFE
  249-  260 (15.41/ 8.33)	RADASTnW.KEFT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     125.46|      24|      24|     130|     153|       6
---------------------------------------------------------------------------
  117-  138 (31.01/14.73)	PLPQ......P..NSQGpnnA.MP.NLGGPRT
  139-  162 (44.49/24.19)	PLSS.SYTFAP..SSYG...Q.MP.RSFNDST
  163-  191 (25.51/10.86)	QYQSiSQLHAPnvSSEG...QvTPlQYTGERP
  192-  209 (24.45/10.11)	AVTS.S..IAP..ET.G...V.RP.NSAG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.09|      11|      40|     220|     230|       7
---------------------------------------------------------------------------
  220-  230 (22.51/15.10)	SAEGRRFYYNR
  261-  271 (23.58/16.17)	SPDGRKYYYNK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14369 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APVIATGDGDVQTAAASRSSTSPVVASPVIENPNGVHTPVVVPS
2) ENEEAMDDVTGKKMNDIASEEKPVDREPISY
3) GRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAIPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQYTGERPAVTSSIAPETGVRPNSAGGTVAEWR
4) MANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVV
337
422
58
1
380
452
216
38










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYN
264
270